Microbial transformation of virus-induced dissolved organic matter from picocyanobacteria: coupling of bacterial diversity and DOM chemodiversity

被引:148
作者
Zhao, Zhao [1 ,2 ]
Gonsior, Michael [3 ]
Schmitt-Kopplin, Philippe [4 ,5 ]
Zhan, Yuanchao [6 ]
Zhang, Rui [1 ]
Jiao, Nianzhi [1 ]
Chen, Feng [6 ,7 ]
机构
[1] Xiamen Univ, Coll Ocean & Earth Sci, Inst Marine Microbes & Ecosphere, State Key Lab Marine Environm Sci, Xiamen, Fujian, Peoples R China
[2] Sun Yat Sen Univ, Sch Marine Sci, Zhuhai, Peoples R China
[3] Univ Maryland, Chesapeake Biol Lab, Ctr Environm Sci, Solomons, MD 20688 USA
[4] Helmholtz Zentrum Muenchen, Res Unit Analyt BioGeoChem, Neuherberg, Germany
[5] Tech Univ Munich, Chair Analyt Food Chem, Freising Weihenstephan, Germany
[6] Univ Maryland, Inst Marine & Environm Technol, Ctr Environm Sci, Cambridge, MD USA
[7] Shandong Univ, Inst Marine & Sci Technol, Joint Lab Microbial Oceanog QNLMST, Qingdao, Peoples R China
基金
美国国家科学基金会;
关键词
MARINE; CYANOPHAGES; ABUNDANCE; CARBON; BACTERIOPLANKTON; PROCHLOROCOCCUS; ASSEMBLAGES; PREVALENCE; MORTALITY; GENOMICS;
D O I
10.1038/s41396-019-0449-1
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Picocyanobacteria make up half of the ocean's primary production, and they are subjected to frequent viral infection. Viral lysis of picocyanobacteria is a major driving force converting biologically fixed carbon into dissolved organic carbon (DOC). Viral-induced dissolved organic matter (vDOM) released from picocyanobacteria provides complex organic matter to bacterioplankton in the marine ecosystem. In order to understand how picocyanobacterial vDOM are transformed by bacteria and the impact of this process on bacterial community structure, viral lysate of picocyanobacteria was incubated with coastal seawater for 90 days. The transformation of vDOM was analyzed by ultrahigh-resolution mass spectrometry and the shift of bacterial populations analyzed using high-throughput sequencing technology. Addition of picocyanobacterial vDOM introduced abundant nitrogen components into the coastal water, which were largely degraded during the 90 days' incubation period. However, some DOM signatures were accumulated and the total assigned formulae number increased over time. In contrast to the control (no addition of vDOM), bacterial community enriched with vDOM changed markedly with increased biodiversity indices. The network analysis showed that key bacterial species formed complex relationship with vDOM components, suggesting the potential correspondence between bacterial populations and DOM molecules. We demonstrate that coastal bacterioplankton are able to quickly utilize and transform lysis products of picocyanobacteria, meanwhile, bacterial community varies with changing chemodiverisity of DOM. vDOM released from picocyanobacteria generated a complex labile DOM pool, which was converted to a rather stable DOM pool after microbial processing in the time frame of days to weeks.
引用
收藏
页码:2551 / 2565
页数:15
相关论文
共 49 条
[1]   Abundance, biomass and growth rates of Synechococcus sp in a tropical coastal ecosystem (Philippines, South China Sea) [J].
Agawin, NSR ;
Duarte, CM ;
Agustí, S ;
McManus, L .
ESTUARINE COASTAL AND SHELF SCIENCE, 2003, 56 (3-4) :493-502
[2]  
[Anonymous], 1950, FUEL
[3]   Closely related phytoplankton species produce similar suites of dissolved organic matter [J].
Becker, Jamie W. ;
Berube, Paul M. ;
Follett, Christopher L. ;
Waterbury, John B. ;
Chisholm, Sallie W. ;
DeLong, Edward F. ;
Repeta, Daniel J. .
FRONTIERS IN MICROBIOLOGY, 2014, 5
[4]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[5]   Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea [J].
Carlson, CA ;
Ducklow, HW .
AQUATIC MICROBIAL ECOLOGY, 1996, 10 (01) :69-85
[6]   Community genomics among stratified microbial assemblages in the ocean's interior [J].
DeLong, EF ;
Preston, CM ;
Mincer, T ;
Rich, V ;
Hallam, SJ ;
Frigaard, NU ;
Martinez, A ;
Sullivan, MB ;
Edwards, R ;
Brito, BR ;
Chisholm, SW ;
Karl, DM .
SCIENCE, 2006, 311 (5760) :496-503
[7]   Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Larsen, N. ;
Rojas, M. ;
Brodie, E. L. ;
Keller, K. ;
Huber, T. ;
Dalevi, D. ;
Hu, P. ;
Andersen, G. L. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (07) :5069-5072
[8]   A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater [J].
Dittmar, Thorsten ;
Koch, Boris ;
Hertkorn, Norbert ;
Kattner, Gerhard .
LIMNOLOGY AND OCEANOGRAPHY-METHODS, 2008, 6 :230-235
[9]   Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary [J].
Elifantz, H ;
Malmstrom, RR ;
Cottrell, MT ;
Kirchman, DL .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (12) :7799-7805
[10]   Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus [J].
Flombaum, Pedro ;
Gallegos, Jose L. ;
Gordillo, Rodolfo A. ;
Rincon, Jose ;
Zabala, Lina L. ;
Jiao, Nianzhi ;
Karl, David M. ;
Li, William K. W. ;
Lomas, Michael W. ;
Veneziano, Daniele ;
Vera, Carolina S. ;
Vrugt, Jasper A. ;
Martiny, Adam C. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (24) :9824-9829