Recent advances in activity-based probes (ABPs) and affinity-based probes (AfBPs) for profiling of enzymes

被引:106
作者
Fang, Haixiao [1 ]
Peng, Bo [2 ]
Ong, Sing Yee [3 ]
Wu, Qiong [1 ]
Li, Lin [1 ]
Yao, Shao Q. [3 ]
机构
[1] Nanjing Tech Univ NanjingTech, Inst Adv Mat IAM, Key Lab Flexible Elect KLOFE, 30 South Puzhu Rd, Nanjing 211816, Peoples R China
[2] Northwestern Polytech Univ, Frontiers Sci Ctr Flexible Elect, Xian Inst Flexible Elect IFE, Xian Inst Biomed Mat & Engn, 127 West Youyi Rd, Xian 710072, Peoples R China
[3] Natl Univ Singapore, Dept Chem, 4 Sci Dr 2, Singapore 117544, Singapore
基金
中国国家自然科学基金; 国家重点研发计划; 新加坡国家研究基金会;
关键词
PHOTO-CROSS-LINKERS; IN-SITU; MATRIX METALLOPROTEINASES; DEUBIQUITYLATING ENZYMES; IRREVERSIBLE INHIBITOR; SUBSTRATE-SPECIFICITY; FUNCTIONALIZED NAD(+); PROTEOMICS REVEALS; FLUORESCENT-PROBES; PROTEASE ACTIVITY;
D O I
10.1039/d1sc01359a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Activity-based protein profiling (ABPP) is a technique that uses highly selective active-site targeted chemical probes to label and monitor the state of proteins. ABPP integrates the strengths of both chemical and biological disciplines. By utilizing chemically synthesized or modified bioactive molecules, ABPP is able to reveal complex physiological and pathological enzyme-substrate interactions at molecular and cellular levels. It is also able to provide critical information of the catalytic activity changes of enzymes, annotate new functions of enzymes, discover new substrates of enzymes, and allow real-time monitoring of the cellular location of enzymes. Based on the mechanism of probe-enzyme interaction, two types of probes that have been used in ABPP are activity-based probes (ABPs) and affinity-based probes (AfBPs). This review highlights the recent advances in the use of ABPs and AfBPs, and summarizes their design strategies (based on inhibitors and substrates) and detection approaches.
引用
收藏
页码:8288 / 8310
页数:24
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共 176 条
  • [11] Tetrazine ligation: Fast bioconjugation based on inverse-electron-demand Diels-Alder reactivity
    Blackman, Melissa L.
    Royzen, Maksim
    Fox, Joseph M.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (41) : 13518 - +
  • [12] Dynamic imaging of protease activity with fluorescently quenched activity-based probes
    Blum, G
    Mullins, SR
    Keren, K
    Fonovic, M
    Jedeszko, C
    Rice, MJ
    Sloane, BF
    Bogyo, M
    [J]. NATURE CHEMICAL BIOLOGY, 2005, 1 (04) : 203 - 209
  • [13] Noninvasive optical imaging of cysteine protease activity using fluorescently quenched activity-based probes
    Blum, Galia
    von Degenfeld, Georges
    Merchant, Milton J.
    Blau, Helen M.
    Bogyo, Matthew
    [J]. NATURE CHEMICAL BIOLOGY, 2007, 3 (10) : 668 - 677
  • [14] Covalent modification of the active site threonine of proteasomal beta subunits and the Escherichia coli homolog HslV by a new class of inhibitors
    Bogyo, M
    McMaster, JS
    Gaczynska, M
    Tortorella, D
    Goldberg, AL
    Ploegh, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (13) : 6629 - 6634
  • [15] DEMONSTRATION OF A DEFICIENCY OF GLUCOCEREBROSIDE-CLEAVING ENZYME IN GAUCHERS DISEASE
    BRADY, RO
    KANFER, JN
    BRADLEY, RM
    SHAPIRO, D
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 1966, 45 (07) : 1112 - &
  • [16] Real-Time Cellular Imaging of Protein Poly(ADP-ribos)ylation
    Buntz, Annette
    Wallrodt, Sarah
    Gwosch, Eva
    Schmalz, Michael
    Beneke, Sascha
    Ferrando-May, Elisa
    Marx, Andreas
    Zumbusch, Andreas
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2016, 55 (37) : 11256 - 11260
  • [17] Structural Basis for Regulation of Phosphoinositide Kinases and Their Involvement in Human Disease
    Burke, John E.
    [J]. MOLECULAR CELL, 2018, 71 (05) : 653 - 673
  • [18] Acalabrutinib (ACP-196) in Relapsed Chronic Lymphocytic Leukemia
    Byrd, John C.
    Harrington, Bonnie
    O'Brien, Susan
    Jones, Jeffrey A.
    Schuh, Anna
    Devereux, Steve
    Chaves, Jorge
    Wierda, William G.
    Awan, Farrukh T.
    Brown, Jennifer R.
    Hillmen, Peter
    Stephens, Deborah M.
    Ghia, Paolo
    Barrientos, Jacqueline C.
    Pagel, John M.
    Woyach, Jennifer
    Johnson, Dave
    Huang, Jane
    Wang, Xiaolin
    Kaptein, Allard
    Lannutti, Brian J.
    Covey, Todd
    Fardis, Maria
    McGreivy, Jesse
    Hamdy, Ahmed
    Rothbaum, Wayne
    Izumi, Raquel
    Diacovo, Thomas G.
    Johnson, Amy J.
    Furman, Richard R.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2016, 374 (04) : 323 - 332
  • [19] Targeting BTK with Ibrutinib in Relapsed Chronic Lymphocytic Leukemia
    Byrd, John C.
    Furman, Richard R.
    Coutre, Steven E.
    Flinn, Ian W.
    Burger, Jan A.
    Blum, Kristie A.
    Grant, Barbara
    Sharman, Jeff P.
    Coleman, Morton
    Wierda, William G.
    Jones, Jeffrey A.
    Zhao, Weiqiang
    Heerema, Nyla A.
    Johnson, Amy J.
    Sukbuntherng, Juthamas
    Chang, Betty Y.
    Clow, Fong
    Hedrick, Eric
    Buggy, Joseph J.
    James, Danelle F.
    O'Brien, Susan
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2013, 369 (01) : 32 - 42
  • [20] The NAD+ Precursor Nicotinamide Riboside Enhances Oxidative Metabolism and Protects against High-Fat Diet-Induced Obesity
    Canto, Caries
    Houtkooper, Riekelt H.
    Pirinen, Eija
    Youn, Dou Y.
    Oosterveer, Maaike H.
    Cen, Yana
    Fernandez-Marcos, Pablo J.
    Yamamoto, Hiroyasu
    Andreux, Penelope A.
    Cettour-Rose, Philippe
    Gademann, Karl
    Rinsch, Chris
    Schoonjans, Kristina
    Sauve, Anthony A.
    Auwerx, Johan
    [J]. CELL METABOLISM, 2012, 15 (06) : 838 - 847