Research Progress on Long Noncoding RNAs

被引:8
作者
Chen Xiao-Min [1 ]
Zhang Dong-Dong [1 ]
Luo Jian-Jun [1 ]
Chen Run-Sheng [1 ]
机构
[1] Chinese Acad Sci, Inst Biophys, Key Lab RNA Biol, Beijing 100101, Peoples R China
关键词
long noncoding RNA; mechanism; development and reprogramming; epigenetic regulation; technologies; PLURIPOTENT STEM-CELLS; GENE-EXPRESSION; MUSCLE DIFFERENTIATION; CHROMATIN INTERACTIONS; TRANSCRIPTIONAL NOISE; IN-VIVO; GENOME; EVOLUTION; CANCER; MOUSE;
D O I
10.3724/SP.J.1206.2014.00294
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Long noncoding RNAs are non-protein coding transcripts greater than 200 bp in length. Rapidly growing studies showed that these 90% non-protein coding regions in human genome, instead of being "transcription noise", were also playing important roles on transcription initiation, elongation and post-transcriptional regulation etc., thus affecting various biological processes. Based on recent research progress on long noncoding RNAs, this review aims to summarize their origin and evolution, novel kinds of long noncoding RNAs, typical functional mechanisms of long noncoding RNAs, and their roles in development and reprogramming. We also tried to update studies on epigenetic regulation of long noncoding RNAs as well as their roles in cancer research, and some closely related modem technologies for long noncoding RNAs. Systematic screen of long noncoding RNAs and the elaboration of their functional mechanisms will play critical roles in the progress of modem life sciences.
引用
收藏
页码:997 / 1009
页数:13
相关论文
共 81 条
[1]   Complex architecture and regulated expression of the Sox2ot locus during vertebrate development [J].
Amaral, Paulo P. ;
Neyt, Christine ;
Wilkins, Simon J. ;
Askarian-Amiri, Marjan E. ;
Sunkin, Susan M. ;
Perkins, Andrew C. ;
Mattick, John S. .
RNA, 2009, 15 (11) :2013-2027
[2]  
[Anonymous], GUT
[3]   Long Noncoding RNA TARID Directs Demethylation and Activation of the Tumor Suppressor TCF21 via GADD45A [J].
Arab, Khelifa ;
Park, Yoon Jung ;
Lindroth, Anders M. ;
Schaefer, Andrea ;
Oakes, Christopher ;
Weichenhan, Dieter ;
Lukanova, Annekatrin ;
Lundin, Eva ;
Risch, Angela ;
Meister, Michael ;
Dienemann, Hendrik ;
Dyckhoff, Gerhard ;
Herold-Mende, Christel ;
Grummt, Ingrid ;
Niehrs, Christof ;
Plass, Christoph .
MOLECULAR CELL, 2014, 55 (04) :604-614
[4]   Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells [J].
Ball, Madeleine P. ;
Li, Jin Billy ;
Gao, Yuan ;
Lee, Je-Hyuk ;
LeProust, Emily M. ;
Park, In-Hyun ;
Xie, Bin ;
Daley, George Q. ;
Church, George M. .
NATURE BIOTECHNOLOGY, 2009, 27 (04) :361-368
[5]   Long Noncoding RNAs: Cellular Address Codes in Development and Disease [J].
Batista, Pedro J. ;
Chang, Howard Y. .
CELL, 2013, 152 (06) :1298-1307
[6]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[7]   A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J].
Cesana, Marcella ;
Cacchiarelli, Davide ;
Legnini, Ivano ;
Santini, Tiziana ;
Sthandier, Olga ;
Chinappi, Mauro ;
Tramontano, Anna ;
Bozzoni, Irene .
CELL, 2011, 147 (02) :358-369
[8]   Induced Pluripotent Stem Cells and Embryonic Stem Cells Are Distinguished by Gene Expression Signatures [J].
Chin, Mark H. ;
Mason, Mike J. ;
Xie, Wei ;
Volinia, Stefano ;
Singer, Mike ;
Peterson, Cory ;
Ambartsumyan, Gayane ;
Aimiuwu, Otaren ;
Richter, Laura ;
Zhang, Jin ;
Khvorostov, Ivan ;
Ott, Vanessa ;
Grunstein, Michael ;
Lavon, Neta ;
Benvenisty, Nissim ;
Croce, Carlo M. ;
Clark, Amander T. ;
Baxter, Tim ;
Pyle, April D. ;
Teitell, Mike A. ;
Pelegrini, Matteo ;
Plath, Kathrin ;
Lowry, William E. .
CELL STEM CELL, 2009, 5 (01) :111-123
[9]   Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions [J].
Chu, Ci ;
Qu, Kun ;
Zhong, Franklin L. ;
Artandi, Steven E. ;
Chang, Howard Y. .
MOLECULAR CELL, 2011, 44 (04) :667-678
[10]  
COMINGS DE, 1972, ADV HUM GENET, P237