A first-generation whole genome radiation hybrid map spanning the mouse genome

被引:157
作者
McCarthy, LC
Terrett, J
Davis, ME
Knights, CJ
Smith, AL
Critcher, R
Schmitt, K
Hudson, J
Spurr, NK
Goodfellow, PN
机构
[1] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England
[2] SmithKline Beecham Pharmaceut, Harlow CM19 5AW, Essex, England
[3] Millenium Pharmaceut, Cambridge, MA 02139 USA
[4] Res Genet Inc, Huntsville, AL 35801 USA
来源
GENOME RESEARCH | 1997年 / 7卷 / 12期
关键词
D O I
10.1101/gr.7.12.1153
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have assembled a first-generation anchor map of the mouse genome using a panel of 94 whole-genome-radiation hybrids (WG-RHs) and 271 sequence-tagged sites (STSs). This is the first genome-wide RH anchor map of a model organism. All of the STSs have been previously localized on the genetic map and are located 8.8 Mb apart on average. This mouse WG-RH panel, known as T31, has an average retention frequency of 27.6% and an estimated potential resolution of 145 kb, making it a powerful resource for efficient large-scale expressed sequence tag mapping.
引用
收藏
页码:1153 / 1161
页数:9
相关论文
共 23 条
[1]   Functional identification of the mouse circadian Clock gene by transgenic BAC rescue [J].
Antoch, MP ;
Song, EJ ;
Chang, AM ;
Vitaterna, MH ;
Zhao, YL ;
Wilsbacher, LD ;
Sangoram, AM ;
King, DP ;
Pinto, LH ;
Takahashi, JS .
CELL, 1997, 89 (04) :655-667
[2]  
BOEHNKE M, 1991, AM J HUM GENET, V49, P1174
[3]   TOWARDS HIGH-RESOLUTION MAPS OF THE MOUSE AND HUMAN GENOMES - A FACILITY FOR ORDERING MARKERS TO 0.1 CM RESOLUTION [J].
BREEN, M ;
DEAKIN, L ;
MACDONALD, B ;
MILLER, S ;
SIBSON, R ;
TARTTELIN, E ;
AVNER, P ;
BOURGADE, F ;
GUENET, JL ;
MONTAGUTELLI, X ;
POIRIER, C ;
SIMON, D ;
TAILOR, D ;
BISHOP, M ;
KELLY, M ;
RYSAVY, F ;
RASTAN, S ;
NORRIS, D ;
SHEPHERD, D ;
ABBOTT, C ;
PILZ, A ;
HODGE, S ;
JACKSON, I ;
BOYD, Y ;
BLAIR, H ;
MASLEN, G ;
TODD, JA ;
REED, PW ;
STOYE, J ;
ASHWORTH, A ;
MCCARTHY, L ;
COX, R ;
SCHALKWYK, L ;
LEHRACH, H ;
KLOSE, J ;
GANGADHARAN, U ;
BROWN, S .
HUMAN MOLECULAR GENETICS, 1994, 3 (04) :621-627
[4]   Genomic organization of the mottled gene, the mouse homologue of the human menkes disease gene [J].
Cecchi, C ;
Avner, P .
GENOMICS, 1996, 37 (01) :96-104
[5]   A GENETIC-MAP OF THE MOUSE WITH 4,006 SIMPLE SEQUENCE LENGTH POLYMORPHISMS [J].
DIETRICH, WF ;
MILLER, JC ;
STEEN, RG ;
MERCHANT, M ;
DAMRON, D ;
NAHF, R ;
GROSS, A ;
JOYCE, DC ;
WESSEL, M ;
DREDGE, RD ;
MARQUIS, A ;
STEIN, LD ;
GOODMAN, N ;
PAGE, DC ;
LANDER, ES .
NATURE GENETICS, 1994, 7 (02) :220-245
[6]   NEW METHOD FOR MAPPING GENES IN HUMAN CHROMOSOMES [J].
GOSS, SJ ;
HARRIS, H .
NATURE, 1975, 255 (5511) :680-684
[7]   A radiation hybrid map of the human genome [J].
Gyapay, G ;
Schmitt, K ;
Fizames, C ;
Jones, H ;
VegaCzarny, N ;
Spillett, D ;
Muselet, D ;
PrudHomme, JF ;
Dib, C ;
Auffray, C ;
Morissette, J ;
Weissenbach, J ;
Goodfellow, PN .
HUMAN MOLECULAR GENETICS, 1996, 5 (03) :339-346
[8]   AN STS-BASED MAP OF THE HUMAN GENOME [J].
HUDSON, TJ ;
STEIN, LD ;
GERETY, SS ;
MA, JL ;
CASTLE, AB ;
SILVA, J ;
SLONIM, DK ;
BAPTISTA, R ;
KRUGLYAK, L ;
XU, SH ;
HU, XT ;
COLBERT, AME ;
ROSENBERG, C ;
REEVEDALY, MP ;
ROZEN, S ;
HUI, L ;
WU, XY ;
VESTERGAARD, C ;
WILSON, KM ;
BAE, JS ;
MAITRA, S ;
GANIATSAS, S ;
EVANS, CA ;
DEANGELIS, MM ;
INGALLS, KA ;
NAHF, RW ;
HORTON, LT ;
ANDERSON, MO ;
COLLYMORE, AJ ;
YE, WJ ;
KOUYOUMJIAN, V ;
ZEMSTEVA, IS ;
TAM, J ;
DEVINE, R ;
COURTNEY, DF ;
RENAUD, MT ;
NGUYEN, H ;
OCONNOR, TJ ;
FIZAMES, C ;
FAURE, S ;
GYAPAY, G ;
DIB, C ;
MORISSETTE, J ;
ORLIN, JB ;
BIRREN, BW ;
GOODMAN, N ;
WEISSENBACH, J ;
HAWKINS, TL ;
FOOTE, S ;
PAGE, DC .
SCIENCE, 1995, 270 (5244) :1945-1954
[9]   Identification and characterization of the mouse obesity gene tubby: A member of a novel gene family [J].
Kleyn, PW ;
Fan, W ;
Kovats, SG ;
Lee, JJ ;
Pulido, JC ;
Wu, Y ;
Berkemeier, LR ;
Misumi, DJ ;
Holmgren, L ;
Charlat, O ;
Woolf, EA ;
Tayber, O ;
Brody, T ;
Shu, P ;
Hawkins, F ;
Kennedy, B ;
Baldini, L ;
Ebeling, C ;
Alperin, GD ;
Deeds, J ;
Lakey, ND ;
Culpepper, J ;
Chen, H ;
GlucksmannKuis, MA ;
Carlson, GA ;
Duyk, GM ;
Moore, KJ .
CELL, 1996, 85 (02) :281-290
[10]   Mapping of mammalian genomes with radiation (Goss and Harris) hybrids [J].
Leach, RJ ;
OConnell, P .
ADVANCES IN GENETICS, VOL 33, 1995, 33 :63-99