Gaussian grid: a computational chemistry experiment over a web service-oriented grid

被引:3
作者
Sanna, N.
Castrignano, T.
De Meo, P. D'Onorio
Carrabino, D.
Grandi, A.
Morelli, G.
Caruso, P.
Barone, V.
机构
[1] Consortium Supercomputing Res, CASPUR, I-00185 Rome, Italy
[2] Univ Naples Federico II, Dipartimento Chim, I-80126 Naples, Italy
[3] Univ Naples Federico II, INSTM, I-80126 Naples, Italy
关键词
computational chemistry; quantum chemistry; grid computing; OGSA; web services;
D O I
10.1007/s00214-006-0227-9
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This paper describes the implementation of a quantum chemistry code on a service-oriented grid where the computational workflow is spawned over multiple, geographically distributed, sites. The application porting over the grid and its extension as a web service over local and wide area networks is fully outlined. A description of the procedures developed for this experiment is given in full detail and the applicability of the methodology to similar codes in this scientific area is assessed. The new developed, grid-aware, application has been tested by performing a comprehensive set of benchmarks including quantum mechanical calculations on the water molecule. The obtained results of the benchmarks are reported and a full comparison with respect to the parallel execution of the same tests using the standard code is discussed in detail.
引用
收藏
页码:1145 / 1152
页数:8
相关论文
共 43 条
[1]   Harmonic and anharmonic contributions to parity-violating vibrational frequency difference between enantiomers of chiral molecules [J].
Barone, V ;
Viglione, RG .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (23)
[2]   Vibrational zero-point energies and thermodynamic functions beyond the harmonic approximation [J].
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (07) :3059-3065
[3]   Anharmonic vibrational properties by a fully automated second-order perturbative approach [J].
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2005, 122 (01)
[4]  
BARONE V, 2005, J CHEM PHYS, V122
[5]   Toward an integrated computational approach to CW-ESR spectra of free radicals [J].
Barone, Vincenzo ;
Polimeno, Antonino .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2006, 8 (40) :4609-4629
[6]  
BRANCATO G, 2006, IN PRESS J CHEM PHYS
[7]   A theoretical study of ethylene, cyclopentene and 1-amino-3-cyclopentene adsorption on the silicon (100) surface [J].
Cantele, G ;
Trani, F ;
Ninno, D ;
Cossi, M ;
Barone, V .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2006, 18 (08) :2349-2365
[8]   UNIFIED APPROACH FOR MOLECULAR-DYNAMICS AND DENSITY-FUNCTIONAL THEORY [J].
CAR, R ;
PARRINELLO, M .
PHYSICAL REVIEW LETTERS, 1985, 55 (22) :2471-2474
[9]   Construction of an accurate quartic force field by using generalised least-squares fitting and experimental design [J].
Carbonniere, P ;
Begue, D ;
Dargelos, A ;
Pouchan, C .
CHEMICAL PHYSICS, 2004, 300 (1-3) :41-51
[10]   CSTminer:: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison [J].
Castrignanò, T ;
Canali, A ;
Grillo, G ;
Liuni, S ;
Mignone, F ;
Pesole, G .
NUCLEIC ACIDS RESEARCH, 2004, 32 :W624-W627