Complete Genome Sequence of Adlercreutzia equolifaciens subsp. celatus DSM 18785

被引：4

作者：

Takahashi, Haruno ^{[1
,2
]}

Yang, Jiayue ^{[1
,2
]}

Yamamoto, Hiromitsu ^{[1
,2
]}

Fukuda, Shinji ^{[1
,2
,3
,4
]}

Arakawa, Kazuharu ^{[1
,2
,5
,6
]}

机构：

[1] Keio Univ, Inst Adv Biosci, Tsuruoka, Yamagata, Japan

[2] Keio Univ, Grad Sch Media & Governance, Systems Biol Program, Fujisawa, Kanagawa, Japan

[3] Kanagawa Inst Ind Sci & Technol, Intestinal Microbiota Project, Kawasaki, Kanagawa, Japan

[4] Univ Tsukuba, Transborder Med Res Ctr, Tsukuba, Ibaraki, Japan

[5] Keio Univ, Fac Environm & Informat Studies, Fujisawa, Kanagawa, Japan

[6] Natl Inst Nat Sci, Exploratory Res Ctr Life & Living Syst, Okazaki, Aichi, Japan

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 19期

关键词：

EQUOL; SOY;

D O I：

10.1128/MRA.00354-21

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Adlercreutzia equolifaciens subsp. celatus DSM 18785 was isolated from the cecal contents of a rat and is an obligately anaerobic equol-producing bacterium. Here, we report the finished and annotated genome sequence of this organism, which has a genome size of 2,929,991 bp and a G+C content of 63.2%.

引用

页数：2

共 14 条

[1] Draft Genome Sequences of Type Strains of Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola, Slackia equolifaciens, Slackia faecicanis, and Slackia isoflavoniconvertens [J].

Danylec, Nicolas ;

Stoll, Dominic A. ;

Doetsch, Andreas ;

Huch, Melanie .

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2019, 8 (02)

[2] Transcriptional Regulation of the Equol Biosynthesis Gene Cluster in Adlercreutzia equolifaciens DSM19450T [J].

Florez, Ana Belen ;

Vazquez, Lucia ;

Rodriguez, Javier ;

Redruello, Begona ;

Mayo, Baltasar .

NUTRIENTS, 2019, 11 (05)

[3] Use of Gifu Anaerobic Medium for culturing 32 dominant species of human gut microbes and its evaluation based on short-chain fatty acids fermentation profiles [J].

Gotoh, Aina ;

Nara, Misaki ;

Sugiyama, Yuta ;

Sakanaka, Mikiyasu ;

Yachi, Hiroyuki ;

Kitakata, Aya ;

Nakagawa, Akira ;

Minami, Hiromichi ;

Okuda, Shujiro ;

Katoh, Toshihiko ;

Katayama, Takane ;

Kurihara, Shin .

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2017, 81 (10) :2009-2017

[4] Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation [J].

Koren, Sergey ;

Walenz, Brian P. ;

Berlin, Konstantin ;

Miller, Jason R. ;

Bergman, Nicholas H. ;

Phillippy, Adam M. .

GENOME RESEARCH, 2017, 27 (05) :722-736

[5] Fast and accurate long-read alignment with Burrows-Wheeler transform [J].

Li, Heng ;

Durbin, Richard .

BIOINFORMATICS, 2010, 26 (05) :589-595

[6] Asaccharobacter celatus gen. nov., sp nov., isolated from rat caecum [J].

Minamida, Kimiko ;

Ota, Kyohei ;

Nishimukai, Megumi ;

Tanaka, Michiko ;

Abe, Ayumi ;

Sone, Teruo ;

Tomita, Fusao ;

Hara, Hiroshi ;

Asano, Kozo .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :1238-1240

[7] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

[8]

Sayers EW, 2019, NUCLEIC ACIDS RES, V47

[9] The clinical importance of the metabolite equol - A clue to the effectiveness of soy and its isoflavones [J].

Setchell, KDR ;

Brown, NM ;

Lydeking-Olsen, E .

JOURNAL OF NUTRITION, 2002, 132 (12) :3577-3584

[10] DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication [J].

Tanizawa, Yasuhiro ;

Fujisawa, Takatomo ;

Nakamura, Yasukazu .

BIOINFORMATICS, 2018, 34 (06) :1037-1039

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