Solvent effects on the excited state characteristics of adenine-thymine base pairs

被引:11
作者
Saha, S. [1 ]
Quiney, H. M. [1 ]
机构
[1] Univ Melbourne, ARC Ctr Excellence Adv Mol Imaging, Theoret Condensed Matter Phys Grp, Sch Phys, Parkville, Vic 3010, Australia
基金
澳大利亚研究理事会;
关键词
CHARGE-TRANSFER; AB-INITIO; NUCLEIC-ACIDS; ELECTRONIC EXCITATIONS; BUILDING-BLOCKS; WATSON-CRICK; SHORT-RANGE; DNA; ENERGIES; DYNAMICS;
D O I
10.1039/c7ra03244g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The ability to dissipate electronic excitation and thus prevent photo-induced damage and provide natural protection and photo-stability is, perhaps, the most significant characteristic of DNA bases as the building blocks of life on Earth. Therefore, it is understandable that studies of the excited states of DNA bases have attracted remarkable research interest. The challenge of experimental studies of DNA photo-physics stems from the intrinsic complexity of the dynamical behaviours of the excited states. In this regard, quantum mechanical methods for studying excited electronic states provide helpful insight. In this study we utilize time dependent density functional theory (TDDFT) to analyse the excited states of the DNA base-pair adenine-thymine in both the canonical Watson-Crick and stacked configurations. The excited state wavefunctions are analysed and visualized in terms of the one-electron transition density matrix (1TDM) and natural transition orbitals. The environmental effect on the excited states is considered by using a non-empirical effective fragment potential method. The extent of de-localization and the charge transfer character of the excited states in the near-and far-ultraviolet region of the electromagnetic spectrum are identified. It is also shown that the environmental effect on the de-localization is significant and varies with the configuration. Additionally, localized Frenkel type states, as well as de-localized states involving multiple molecular fragments, are also identified.
引用
收藏
页码:33426 / 33440
页数:15
相关论文
共 77 条
[1]   SINGLE DETERMINANT WAVE FUNCTIONS [J].
AMOS, AT ;
HALL, GG .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1961, 263 (1312) :483-+
[2]   Exciton analysis of many-body wave functions: Bridging the gap between the quasiparticle and molecular orbital pictures [J].
Baeppler, Stefanie A. ;
Plasser, Felix ;
Wormit, Michael ;
Dreuw, Andreas .
PHYSICAL REVIEW A, 2014, 90 (05)
[3]   Nonadiabatic deactivation of 9H-adenine:: A comprehensive picture based on mixed quantum-classical dynamics [J].
Barbatti, Mario ;
Lischka, Hans .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (21) :6831-6839
[4]   Photoinduced Processes in Nucleic Acids [J].
Barbatti, Mario ;
Borin, Antonio Carlos ;
Ullrich, Susanne .
PHOTOINDUCED PHENOMENA IN NUCLEIC ACIDS I: NUCLEOBASES IN THE GAS PHASE AND IN SOLVENTS, 2015, 355 :1-32
[5]   Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory [J].
Bauernschmitt, R ;
Ahlrichs, R .
CHEMICAL PHYSICS LETTERS, 1996, 256 (4-5) :454-464
[6]   Life in the light: nucleic acid photoproperties as a legacy of chemical evolution [J].
Beckstead, Ashley A. ;
Zhang, Yuyuan ;
de Vries, Mattanjah S. ;
Kohler, Bern .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (35) :24228-24238
[7]   Characterization of the excited states of DNA building blocks: a coupled cluster computational study [J].
Benda, Zsuzsanna ;
Szalay, Peter G. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (34) :23596-23606
[8]   Exciton delocalization, charge transfer, and electronic coupling for singlet excitation energy transfer between stacked nucleobases in DNA: An MS-CASPT2 study [J].
Blancafort, Lluis ;
Voityuk, Alexander A. .
JOURNAL OF CHEMICAL PHYSICS, 2014, 140 (09)
[9]   Aiming at an accurate prediction of vibrational and electronic spectra for medium-to-large molecules: An overview [J].
Bloino, Julien ;
Baiardi, Alberto ;
Biczysko, Malgorzata .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2016, 116 (21) :1543-1574
[10]   General Approach to Compute Vibrationally Resolved One-Photon Electronic Spectra [J].
Bloino, Julien ;
Biczysko, Malgorzata ;
Santoro, Fabrizio ;
Barone, Vincenzo .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (04) :1256-1274