Genetic modification of primary human B cells to model high-grade lymphoma

被引:38
作者
Caeser, Rebecca [1 ,2 ]
Di Re, Miriam [1 ,2 ]
Krupka, Joanna A. [1 ,2 ,3 ]
Gao, Jie [1 ,2 ]
Lara-Chica, Maribel [4 ]
Dias, Joao M. L. [4 ]
Cooke, Susanna L. [5 ]
Fenner, Rachel [1 ,2 ]
Usheva, Zelvera [1 ,2 ]
Runge, Hendrik F. P. [1 ,2 ]
Beer, Philip A. [6 ]
Eldaly, Hesham [7 ,8 ]
Pak, Hyo-Kyung [9 ]
Park, Chan-Sik [9 ]
Vassiliou, George S. [1 ,2 ,6 ]
Huntly, Brian J. P. [1 ,2 ]
Mupo, Annalisa [4 ]
Bashford-Rogers, Rachael J. M. [10 ]
Hodson, Daniel J. [1 ,2 ]
机构
[1] Wellcome MRC Cambridge Stem Cell Inst, Cambridge CB2 0AW, England
[2] Univ Cambridge, Dept Haematol, Cambridge, England
[3] Univ Cambridge, Hutchison MRC Res Ctr, MRC Canc Unit, Cambridge, England
[4] Univ Cambridge, Dept Haematol, CMDL, Cambridge, England
[5] Univ Glasgow, Wolfson Wohl Canc Res Ctr, Inst Canc Sci, Garscube Estate, Glasgow, Lanark, Scotland
[6] Wellcome Sanger Inst, Wellcome Genome Campus, Hinxton CB10 1SA, CA, Scotland
[7] Cambridge Univ Hosp, Dept Pathol, Cambridge, England
[8] Cairo Univ, Dept Clin Pathol, Giza, Egypt
[9] Univ Ulsan, Asan Med Ctr, Dept Pathol, Coll Med, Seoul, South Korea
[10] Wellcome Ctr Human Genet, Roosevelt Dr, Oxford OX3 7BN, England
基金
英国医学研究理事会;
关键词
GERMINAL CENTER; THERAPEUTIC TARGETS; EXPRESSION; DIFFERENTIATION; PATHOGENESIS; GENERATION; IL-21; IDENTIFICATION; PROLIFERATION; TRANSDUCTION;
D O I
10.1038/s41467-019-12494-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Sequencing studies of diffuse large B cell lymphoma (DLBCL) have identified hundreds of recurrently altered genes. However, it remains largely unknown whether and how these mutations may contribute to lymphomagenesis, either individually or in combination. Existing strategies to address this problem predominantly utilize cell lines, which are limited by their initial characteristics and subsequent adaptions to prolonged in vitro culture. Here, we describe a co-culture system that enables the ex vivo expansion and viral transduction of primary human germinal center B cells. Incorporation of CRISPR/Cas9 technology enables high-throughput functional interrogation of genes recurrently mutated in DLBCL. Using a backbone of BCL2 with either BCL6 or MYC, we identify co-operating genetic alterations that promote growth or even full transformation into synthetically engineered DLBCL models. The resulting tumors can be expanded and sequentially transplanted in vivo, providing a scalable platform to test putative cancer genes and to create mutation-directed, bespoke lymphoma models.
引用
收藏
页数:16
相关论文
共 69 条
  • [31] Generation of stable monoclonal antibody-producing B cell receptor-positive human memory B cells by genetic programming
    Kwakkenbos, Mark J.
    Diehl, Sean A.
    Yasuda, Etsuko
    Bakker, Arjen Q.
    van Geelen, Caroline M. M.
    Lukens, Michael V.
    van Bleek, Grada M.
    Widjojoatmodjo, Myra N.
    Bogers, Willy M. J. M.
    Mei, Henrik
    Radbruch, Andreas
    Scheeren, Ferenc A.
    Spits, Hergen
    Beaumont, Tim
    [J]. NATURE MEDICINE, 2010, 16 (01) : 123 - U164
  • [32] The sva package for removing batch effects and other unwanted variation in high-throughput experiments
    Leek, Jeffrey T.
    Johnson, W. Evan
    Parker, Hilary S.
    Jaffe, Andrew E.
    Storey, John D.
    [J]. BIOINFORMATICS, 2012, 28 (06) : 882 - 883
  • [33] Li H, 2013, arXiv preprint arXiv:1303.3997
  • [34] Li H, 2009, BIOINFORMATICS, V25, P1094, DOI [10.1093/bioinformatics/btp100, 10.1093/bioinformatics/btp324]
  • [35] featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
    Liao, Yang
    Smyth, Gordon K.
    Shi, Wei
    [J]. BIOINFORMATICS, 2014, 30 (07) : 923 - 930
  • [36] IL-21 acts directly on B cells to regulate Bcl-6 expression and germinal center responses
    Linterman, Michelle A.
    Beaton, Laura
    Yu, Di
    Ramiscal, Roybel R.
    Srivastava, Monika
    Hogan, Jennifer J.
    Verma, Naresh K.
    Smyth, Mark J.
    Rigby, Robert J.
    Vinuesa, Carola G.
    [J]. JOURNAL OF EXPERIMENTAL MEDICINE, 2010, 207 (02) : 353 - 363
  • [37] Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    Love, Michael I.
    Huber, Wolfgang
    Anders, Simon
    [J]. GENOME BIOLOGY, 2014, 15 (12):
  • [38] PD-L1 and tumor-associated macrophages in de novo DLBCL
    McCord, Ronald
    Bolen, Christopher R.
    Koeppen, Hartmut
    Kadel, Edward E., III
    Oestergaard, Mikkel Z.
    Nielsen, Tina
    Sehn, Laurie H.
    Venstrom, Jeffrey M.
    [J]. BLOOD ADVANCES, 2019, 3 (04) : 531 - 540
  • [39] The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    McKenna, Aaron
    Hanna, Matthew
    Banks, Eric
    Sivachenko, Andrey
    Cibulskis, Kristian
    Kernytsky, Andrew
    Garimella, Kiran
    Altshuler, David
    Gabriel, Stacey
    Daly, Mark
    DePristo, Mark A.
    [J]. GENOME RESEARCH, 2010, 20 (09) : 1297 - 1303
  • [40] The Ensembl Variant Effect Predictor
    McLaren, William
    Gil, Laurent
    Hunt, Sarah E.
    Riat, Harpreet Singh
    Ritchie, Graham R. S.
    Thormann, Anja
    Flicek, Paul
    Cunningham, Fiona
    [J]. GENOME BIOLOGY, 2016, 17