Are Next-Generation Sequencing Tools Ready for the Cloud?

被引：13

作者：

Celesti, Antonio ^{[1
]}

Celesti, Fabrizio ^{[2
]}

Fazio, Maria ^{[3
]}

Bramanti, Placido ^{[4
]}

Villari, Massimo ^{[3
,4
]}

机构：

[1] Univ Messina, Sci Res Org Unit, Messina, Italy

[2] Univ Messina, Dept Biomed & Dent Sci & Morphofunct Images, Messina, Italy

[3] Univ Messina, Dept Engn, Messina, Italy

[4] IRCCS Ctr Neurolesi Bonino Pulejo, Messina, Italy

来源：

TRENDS IN BIOTECHNOLOGY | 2017年 / 35卷 / 06期

关键词：

GENOMICS; SCIENCE; SNPS;

D O I：

10.1016/j.tibtech.2017.03.005

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Cloud-based next-generation sequencing (NGS) tools are currently at an early stage. In this Forum article, we provide a clear picture of the current cloud-based NGS solutions and highlight what is still missing, along with future challenges for the achievement of an ecosystem of biotechnology clouds.

引用

收藏

页码：486 / 489

页数：5

相关论文

共 15 条

[1] Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing [J].

Angiuoli, Samuel V. ;

White, James R. ;

Matalka, Malcolm ;

White, Owen ;

Fricke, W. Florian .

PLOS ONE, 2011, 6 (10)

[2]

Celesti A, 2016, 2016 IEEE SYMPOSIUM ON COMPUTERS AND COMMUNICATION (ISCC), P267, DOI 10.1109/ISCC.2016.7543751

[3] BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data [J].

Chae, Heejoon ;

Rhee, Sungmin ;

Nephew, Kenneth P. ;

Kim, Sun .

BIOINFORMATICS, 2015, 31 (02) :265-267

[4] From genomics to metagenomics [J].

Desai, Narayan ;

Antonopoulos, Dion ;

Gilbert, Jack A. ;

Glass, Elizabeth M. ;

Meyer, Folker .

CURRENT OPINION IN BIOTECHNOLOGY, 2012, 23 (01) :72-76

[5] Application of next generation sequencing in clinical microbiology and infection prevention [J].

Deurenberg, Ruud H. ;

Bathoorn, Erik ;

Chlebowicz, Monika A. ;

Couto, Natacha ;

Ferdous, Mithila ;

Garcia-Cobos, Silvia ;

Kooistra-Smid, Anna M. D. ;

Raangs, Erwin C. ;

Rosema, Sigrid ;

Veloo, Alida C. M. ;

Zhou, Kai ;

Friedrich, Alexander W. ;

Rossen, John W. A. .

JOURNAL OF BIOTECHNOLOGY, 2017, 243 :16-24

[6] The SNPs in the human genetic blueprint era [J].

Giampaoli, S. ;

Chillemi, G. ;

Valeriani, F. ;

Lazzaro, D. ;

Borro, M. ;

Gentile, G. ;

Simmaco, M. ;

Zanni, G. ;

Berti, A. ;

Romano Spica, Vincenzo .

NEW BIOTECHNOLOGY, 2013, 30 (05) :475-484

[7] SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors [J].

Goya, Rodrigo ;

Sun, Mark G. F. ;

Morin, Ryan D. ;

Leung, Gillian ;

Ha, Gavin ;

Wiegand, Kimberley C. ;

Senz, Janine ;

Crisan, Anamaria ;

Marra, Marco A. ;

Hirst, Martin ;

Huntsman, David ;

Murphy, Kevin P. ;

Aparicio, Sam ;

Shah, Sohrab P. .

BIOINFORMATICS, 2010, 26 (06) :730-736

[8] Bacterial population genomics and infectious disease diagnostics [J].

Joseph, Sandeep J. ;

Read, Timothy D. .

TRENDS IN BIOTECHNOLOGY, 2010, 28 (12) :611-618

[9] Cost-Effective Cloud Computing: A Case Study Using the Comparative Genomics Tool, Roundup [J].

Kudtarkar, Parul ;

DeLuca, Todd F. ;

Fusaro, Vincent A. ;

Tonellato, Peter J. ;

Wall, Dennis P. .

EVOLUTIONARY BIOINFORMATICS, 2010, 6 :197-203

[10] CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment [J].

Oh, Jeongsu ;

Choi, Chi-Hwan ;

Park, Min-Kyu ;

Kim, Byung Kwon ;

Hwang, Kyuin ;

Lee, Sang-Heon ;

Hong, Soon Gyu ;

Nasir, Arshan ;

Cho, Wan-Sup ;

Kim, Kyung Mo .

PLOS ONE, 2016, 11 (03)