Microfluidics as a Strategic Player to Decipher Single-Cell Omics?

被引:18
作者
Caen, Ouriel [1 ]
Lu, Heng [1 ]
Nizard, Philippe [1 ]
Taly, Valerie [1 ]
机构
[1] Paris Descartes Univ, CNRS SNC5014, INSERM UMR S1147, Equipe Labellisee Ligue Natl Canc, Paris, France
关键词
DROPLET-BASED MICROFLUIDICS; WHOLE-GENOME AMPLIFICATION; LARGE-SCALE INTEGRATION; HIGH-THROUGHPUT; RNA-SEQ; MULTIPARAMETER ANALYSIS; SIGNALING PATHWAYS; NANOLITER DROPLETS; DRUG DISCOVERY; TUMOR-CELLS;
D O I
10.1016/j.tibtech.2017.05.004
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Most cell studies are performed at a population level, relying on the assumption of a normal distribution of the function and fate of a cell among a population. However, technologies allowing single-cell analysis (SCA) have recently arisen and have led to increasing evidence of cell population heterogeneity and its importance. Tremendous amounts of new data could now be uncovered to redefine our understanding of cell omics. Microfluidics has emerged as a major technological player in this new era and is gradually increasing in use among biology laboratories, mainly due to the single-cell high-throughput handling solutions it offers. In this review, we assess its use and relevance for omics analysis at the single-cell level, with a specific focus on compartment-based microfluidic approaches.
引用
收藏
页码:713 / 727
页数:15
相关论文
共 98 条
  • [1] Stochastic switching as a survival strategy in fluctuating environments
    Acar, Murat
    Mettetal, Jerome T.
    van Oudenaarden, Alexander
    [J]. NATURE GENETICS, 2008, 40 (04) : 471 - 475
  • [2] A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
    Adamson, Britt
    Norman, Thomas M.
    Jost, Marco
    Cho, Min Y.
    Nunez, James K.
    Chen, Yuwen
    Villalta, Jacqueline E.
    Gilbert, Luke A.
    Horlbeck, Max A.
    Hein, Marco Y.
    Pak, Ryan A.
    Gray, Andrew N.
    Gross, Carol A.
    Dixit, Atray
    Parnas, Oren
    Regev, Aviv
    Weissman, Jonathan S.
    [J]. CELL, 2016, 167 (07) : 1867 - +
  • [3] Recent developments in microfluidic large scale integration
    Araci, Ismail Emre
    Brisk, Philip
    [J]. CURRENT OPINION IN BIOTECHNOLOGY, 2014, 25 : 60 - 68
  • [4] A deep profiler's guide to cytometry
    Bendall, Sean C.
    Nolan, Garry P.
    Roederer, Mario
    Chattopadhyay, Pratip K.
    [J]. TRENDS IN IMMUNOLOGY, 2012, 33 (07) : 323 - 332
  • [5] Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
    Bendall, Sean C.
    Simonds, Erin F.
    Qiu, Peng
    Amir, El-ad D.
    Krutzik, Peter O.
    Finck, Rachel
    Bruggner, Robert V.
    Melamed, Rachel
    Trejo, Angelica
    Ornatsky, Olga I.
    Balderas, Robert S.
    Plevritis, Sylvia K.
    Sachs, Karen
    Pe'er, Dana
    Tanner, Scott D.
    Nolan, Garry P.
    [J]. SCIENCE, 2011, 332 (6030) : 687 - 696
  • [6] Droplet microfluidic technology for single-cell high-throughput screening
    Brouzes, Eric
    Medkova, Martina
    Savenelli, Neal
    Marran, Dave
    Twardowski, Mariusz
    Hutchison, J. Brian
    Rothberg, Jonathan M.
    Link, Darren R.
    Perrimon, Norbert
    Samuels, Michael L.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (34) : 14195 - 14200
  • [7] Single-cell chromatin accessibility reveals principles of regulatory variation
    Buenostro, Jason D.
    Wu, Beijing
    Litzenburger, Ulrike M.
    Ruff, Dave
    Gonzales, Michael L.
    Snyder, Michael P.
    Chang, Howard Y.
    Greenleaf, William J.
    [J]. NATURE, 2015, 523 (7561) : 486 - U264
  • [8] Buenrostro JD, 2013, NAT METHODS, V10, P1213, DOI [10.1038/NMETH.2688, 10.1038/nmeth.2688]
  • [9] Multiplexed locus-specific analysis of DNA methylation in single cells
    Cheow, Lih Feng
    Quake, Stephen R.
    Burkholder, William F.
    Messerschmidt, Daniel M.
    [J]. NATURE PROTOCOLS, 2015, 10 (04) : 619 - 631
  • [10] Probing cellular heterogeneity in cytokine-secreting immune cells using droplet-based microfluidics
    Chokkalingam, Venkatachalam
    Tel, Jurjen
    Wimmers, Florian
    Liu, Xin
    Semenov, Sergey
    Thiele, Julian
    Figdor, Carl G.
    Huck, Wilhelm T. S.
    [J]. LAB ON A CHIP, 2013, 13 (24) : 4740 - 4744