Multi-modal advanced deep learning architectures for breast cancer survival prediction

被引:76
作者
Arya, Nikhilanand [1 ]
Saha, Sriparna [2 ]
机构
[1] Indian Inst Technol Patna, Comp Sci Engn, Patna, Bihar, India
[2] Indian Inst Technol Patna, Dept Comp Sci & Engn, Patna, Bihar, India
关键词
Breast cancer prognosis prediction; Sigmoid gated attention convolutional neural network (SiGaAtCNN); Random forest (RF); Cross-modality attention; Bi-Attention; Uni-modal and multi-modal architecture; Stacked features; INFORMATION;
D O I
10.1016/j.knosys.2021.106965
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Breast cancer is the most frequently occurring cancer and has compelling contributions to increasing mortality rates among women. The manual prognosis and diagnosis of this disease take long hours, even for a medical professional. A model with better predictive power can benefit cancer patients from going through the toxic side effects and extra medical expenses related to unnecessary treatment. Medical professionals can be benefited from early-stage detection and selection of the appropriate cancer treatment plan. The availability of multi-modal cancer data, i.e., genomic details, histopathology images, and clinical details, supports the researchers in proceeding with the development of multi -modal based advanced deep-learning models. This research proposes gated attentive deep learning models stacked with random forest classifiers, which use multi-modal data and produce informative features to enhance the breast cancer prognosis prediction. It is designed as a bi-phase model; phase one uses a sigmoid gated attention convolutional neural network to generate the stacked features, while phase two passes the stacked features to the random forest classifier. The comparative study of the proposed and other existing methods over METABRIC (1980 patients) and TCGA-BRCA (1080 patients) datasets illustrate significant enhancements, 5.1% in sensitivity values, in the survival estimation of breast cancer patients. (c) 2021 Elsevier B.V. All rights reserved.
引用
收藏
页数:11
相关论文
共 49 条
[41]  
2015, bioRxiv, DOI [10.1101/030650, 10.1101/030650, DOI 10.1101/030650]
[42]   Classification assessment methods [J].
Tharwat, Alaa .
APPLIED COMPUTING AND INFORMATICS, 2021, 17 (01) :168-192
[43]  
Tomczak K., 2015, CONT ONCOL, V19, P168
[44]   Missing value estimation methods for DNA microarrays [J].
Troyanskaya, O ;
Cantor, M ;
Sherlock, G ;
Brown, P ;
Hastie, T ;
Tibshirani, R ;
Botstein, D ;
Altman, RB .
BIOINFORMATICS, 2001, 17 (06) :520-525
[45]   A gene-expression signature as a predictor of survival in breast cancer. [J].
van de Vijver, MJ ;
He, YD ;
van 't Veer, LJ ;
Dai, H ;
Hart, AAM ;
Voskuil, DW ;
Schreiber, GJ ;
Peterse, JL ;
Roberts, C ;
Marton, MJ ;
Parrish, M ;
Atsma, D ;
Witteveen, A ;
Glas, A ;
Delahaye, L ;
van der Velde, T ;
Bartelink, H ;
Rodenhuis, S ;
Rutgers, ET ;
Friend, SH ;
Bernards, R .
NEW ENGLAND JOURNAL OF MEDICINE, 2002, 347 (25) :1999-2009
[46]   Multimodal biometric authentication based on score level fusion using support vector machine [J].
Wang, F. ;
Han, J. .
OPTO-ELECTRONICS REVIEW, 2009, 17 (01) :59-64
[47]  
Xiaoyi Xu, 2012, 2012 5th International Conference on BioMedical Engineering and Informatics (BMEI), P928, DOI 10.1109/BMEI.2012.6513032
[48]   Antioxidant Activity of a Flavonoid-rich Extract of Artemisia argyi [J].
Ye, Chun-Lin ;
Liu, Yu ;
Lai, Yi-Feng ;
Liu, Xuan-Gan ;
Mao, Jian-Wei .
PROCEEDINGS OF 2009 INTERNATIONAL CONFERENCE OF NATURAL PRODUCT AND TRADITIONAL MEDICINE, VOLS 1 AND 2, 2009, :1-5
[49]  
Zhang Y., 2019, IEEE J BIOMED HEALTH, P1, DOI [10.1109/JBHI.2019., DOI 10.1109/JBHI.2019]