Theoretical study of the structure and stability of the ferriporphyrin dimer (Fe(III)C34H31N4O4)2

被引:11
作者
Charkin, O. P.
Klimenko, N. M.
Charkin, D. O.
Wang, Y. -S.
Wei, S. -C.
Chang, H. -C.
Lin, S. H.
机构
[1] Russian Acad Sci, Inst Problems Chem Phys, Chernogolovka 142432, Moscow Oblast, Russia
[2] Lomonosov State Acad Fine Chem Technol, Moscow 117571, Russia
[3] Moscow MV Lomonosov State Univ, Higher Coll Mat Sci, Moscow 119992, Russia
[4] Acad Sinica, Inst Atom & Mol Sci, Taipei 106, Taiwan
关键词
D O I
10.1134/S0036023606010153
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
The electronic and geometric structures and dissociation energies of the isolated dimeric ferriporphyrin IX molecule (Fe(III)C34H31O4N4)(2) and its ion and the corresponding monomers Fe(III)C34H31O4N4+ in the states with different multiplicity were calculated using the density functional theory (DFT) B3LYP method with the basis set Gen-1 = 6-311+G*(Fe) + 6-31G(C, H, N, O). The energetic characteristics were refined using the more extended basis set Gen-2 = 6-311+G*(Fe) + 6-31G*(C, H, N, O). The computation results are compared with the available X-ray diffraction data for a powder of beta-hematin, whose lattice is composed of analogous blocks-(Fe(III)C34H31O4N4)(2) dimmers-linked with one another by hydrogen bonds. For the neutral dimer molecule, the lowest-lying states were found to be quasi-degenerate high-and medium-spin states with multiplicities of 11, 9, and 7, while the quintet and triplet states are similar to 0.4 eV higher. For the lowest-lying state, the calculated and experimental parameters of the ferriporphyrin ring are in good agreement with each other. For the peripheral propionate, methyl, and vinyl groups, the discrepancies are more significant (especially for their mutual orientations with respect to the porphyrin ring) and are, most likely, caused by the factors that are significant in solids and vanish in the isolated molecule. The energies of dissociation of the neutral dimer and its ion into monomers were estimated at similar to 3.35 and similar to 3.75 eV, respectively. The trends in the behavior of the structural characteristics of the ferriporphyrin rings upon dimerization and ionization and with a change in the multiplicity of electronic states are analyzed.
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页码:89 / 98
页数:10
相关论文
共 11 条
[1]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[2]   Aggregated heme detoxification byproducts in malarial trophozoites:: β-hematin and malaria pigment have a single S=5/2 iron environment in the bulk phase as determined by EPR and magnetic Mossbauer spectroscopy [J].
Bohle, DS ;
Debrunner, P ;
Jordan, PA ;
Madsen, SK ;
Schulz, CE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (32) :8255-8256
[3]  
Charkin OP, 2005, RUSS J INORG CHEM+, V50, P1398
[4]  
CHARKIN OP, 2006, IN PRESS CHEM PHYS L
[5]  
Frisch M. J., 2016, J AM CHEM SOC, DOI DOI 10.1021/JA205566W
[6]  
GHOSH A, 2000, PORPHYRIN HDB, pCH47
[7]   Low-lying spin states of iron(II) porphine [J].
Kozlowski, PM ;
Spiro, TG ;
Bérces, A ;
Zgierski, MZ .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (14) :2603-2608
[8]  
LECOMTE C, 2000, PORPHYRIN HDB, V7, pCH48
[9]   DEVELOPMENT OF THE COLLE-SALVETTI CORRELATION-ENERGY FORMULA INTO A FUNCTIONAL OF THE ELECTRON-DENSITY [J].
LEE, CT ;
YANG, WT ;
PARR, RG .
PHYSICAL REVIEW B, 1988, 37 (02) :785-789
[10]   The structure of malaria pigment β-haematin [J].
Pagola, S ;
Stephens, PW ;
Bohle, DS ;
Kosar, AD ;
Madsen, SK .
NATURE, 2000, 404 (6775) :307-310