Classification of radiology reports for falls in an HIV study cohort

被引:31
作者
Bates, Jonathan [1 ,3 ]
Fodeh, Samah J. [1 ]
Brandt, Cynthia A. [1 ,3 ]
Womack, Julie A. [2 ,3 ]
机构
[1] Yale Univ, Sch Med, New Haven, CT USA
[2] Yale Univ, Sch Nursing, West Haven, CT USA
[3] VA Connecticut Healthcare Syst, West Haven, CT 06516 USA
关键词
information retrieval; text mining; falls; aging; HIV; ARCHITECTURE;
D O I
10.1093/jamia/ocv155
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Methods We used the Veterans Aging Cohort Study Virtual Cohort (VACS-VC), an electronic health record-based cohort of 146 530 veterans for whom radiology reports were available (N =2 977 739). We created a reference standard of radiology reports, represented each report by a feature set of words and Unified Medical Language System concepts, and then developed several support vector machine (SVM) classifiers for falls. We compared mutual information (MI) ranking and embedded feature selection approaches. The SVM classifier with MI feature selection was chosen to classify all radiology reports in VACS-VC. Results Our SVM classifier with MI feature selection achieved an area under the curve score of 97.04 on the test set. When applied to all the radiology reports in VACS-VC, 80 416 of these reports were classified as positive for a fall. Of these, 11 484 were associated with a fall-related external cause of injury code (E-code) and 68 932 were not, corresponding to 29 280 patients with potential fall-related injuries who could not have been found using E-codes. Discussion Feature selection was crucial to improving the classifier's performance. Feature selection with MI allowed us to select the number of discriminative features to use for classification, in contrast to the embedded feature selection method, in which the number of features is chosen automatically. Conclusion Machine learning is an effective method of identifying patients who have suffered a fall. The development of this classifier supplements the clinical researcher's toolkit and reduces dependence on under-coded structured electronic health record data.
引用
收藏
页码:E113 / E117
页数:5
相关论文
共 19 条
[1]  
Becker N., PENALIZEDSVM FEATURE
[2]   Elastic SCAD as a novel penalization method for SVM classification tasks in high-dimensional data [J].
Becker, Natalia ;
Toedt, Grischa ;
Lichter, Peter ;
Benner, Axel .
BMC BIOINFORMATICS, 2011, 12
[3]  
Ben-Hur A, 2015, USERS GUIDE SUPPORT
[4]   LIBSVM: A Library for Support Vector Machines [J].
Chang, Chih-Chung ;
Lin, Chih-Jen .
ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY, 2011, 2 (03)
[5]  
CORTES C, 1995, MACH LEARN, V20, P273, DOI 10.1023/A:1022627411411
[6]   Identifying wrist fracture patients with high accuracy by automatic categorization of x-ray reports [J].
De Brijun, Berry ;
Cranney, Ann ;
O'Donnell, Siobhan ;
Martin, Joel D. ;
Forster, Alan J. .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2006, 13 (06) :696-698
[7]   What can natural language processing do for clinical decision support? [J].
Demner-Fushman, Dina ;
Chapman, Wendy W. ;
McDonald, Clement J. .
JOURNAL OF BIOMEDICAL INFORMATICS, 2009, 42 (05) :760-772
[8]  
Doan S, 2014, METHODS MOL BIOL, V1168, P275, DOI 10.1007/978-1-4939-0847-9_16
[9]   The Yale cTAKES extensions for document classification: architecture and application [J].
Garla, Vijay ;
Lo Re, Vincent, III ;
Dorey-Stein, Zachariah ;
Kidwai, Farah ;
Scotch, Matthew ;
Womack, Julie ;
Justice, Amy ;
Brandt, Cynthia .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2011, 18 (05) :614-620
[10]  
Guyon I, 2003, J MACH LEARN RES, V3, P1157, DOI DOI 10.1162/153244303322753616