Visualizing and comparing circular genomes using the CGView family of tools

被引：183

作者：

Stothard, Paul ^{[1
]}

Grant, Jason R. ^{[1
]}

Van Domselaar, Gary ^{[2
,3
]}

机构：

[1] Univ Alberta, Dept Agr Food & Nutr Sci, Edmonton, AB T6G 2P5, Canada

[2] Natl Microbiol Lab, Bioinformat Lab, Winnipeg, MB, Canada

[3] Univ Manitoba, Dept Med Microbiol, Winnipeg, MB, Canada

来源：

BRIEFINGS IN BIOINFORMATICS | 2019年 / 20卷 / 04期

关键词：

genome visualization; genome analysis; bacteria; organelles;

D O I：

10.1093/bib/bbx081

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Graphical genome maps are widely used to assess genome features and sequence characteristics. The CGView (Circular Genome Viewer) software family is a popular collection of tools for generating genome maps for bacteria, organelles and viruses. In this review, we describe the capabilities of the original CGView program along with those of subsequent companion applications, including the CGView Server and the CGView Comparison Tool. We also discuss GView, a graphical user interface-enabled rewrite of CGView, and the GView Server, which offers several integrated analyses for identifying shared or unique genome regions relative to a collection of comparison genomes. We conclude with some remarks about our current development efforts related to CGView aimed at adding new functionality while increasing ease of use.

引用

页码：1576 / 1582

页数：7

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