PDBselect 1992-2009 and PDBfilter-select

被引：91

作者：

Griep, Sven ^{[1
]}

Hobohm, Uwe ^{[1
]}

机构：

[1] Univ Appl Sci Giessen, D-35390 Giessen, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

关键词：

PROTEIN STRUCTURES; SEQUENCE ALIGNMENT; DATABASE;

D O I：

10.1093/nar/gkp786

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. The list increased from 155 chains in 1992 to more than 4500 chains in 2009. PDBfilter-select is an online service to generate user-defined selections.

引用

收藏

页码：D318 / D319

页数：2

相关论文

共 11 条

[1] Do aligned sequences share the same fold? [J].

Abagyan, RA ;

Batalov, S .

JOURNAL OF MOLECULAR BIOLOGY, 1997, 273 (01) :355-368

[2] The ASTRAL Compendium in 2004 [J].

Chandonia, JM ;

Hon, G ;

Walker, NS ;

Lo Conte, L ;

Koehl, P ;

Levitt, M ;

Brenner, SE .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D189-D192

[3]

HOBOHM U, 1994, PROTEIN SCI, V3, P522

[4]

HOBOHM U, 1992, PROTEIN SCI, V1, P409

[5]

Hooft RWW, 1996, COMPUT APPL BIOSCI, V12, P525

[6] Errors in protein structures [J].

Hooft, RWW ;

Vriend, G ;

Sander, C ;

Abola, EE .

NATURE, 1996, 381 (6580) :272-272

[7] A TIME-EFFICIENT, LINEAR-SPACE LOCAL SIMILARITY ALGORITHM [J].

HUANG, XQ ;

MILLER, W .

ADVANCES IN APPLIED MATHEMATICS, 1991, 12 (03) :337-357

[8] PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES [J].

LASKOWSKI, RA ;

MACARTHUR, MW ;

MOSS, DS ;

THORNTON, JM .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :283-291

[9] DATABASE OF HOMOLOGY-DERIVED PROTEIN STRUCTURES AND THE STRUCTURAL MEANING OF SEQUENCE ALIGNMENT [J].

SANDER, C ;

SCHNEIDER, R .

PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1991, 9 (01) :56-68

[10] IDENTIFICATION OF COMMON MOLECULAR SUBSEQUENCES [J].

SMITH, TF ;

WATERMAN, MS .

JOURNAL OF MOLECULAR BIOLOGY, 1981, 147 (01) :195-197