The first complete mitochondrial genome of the Maylandia zebra

被引:0
作者
Xia, Yan [1 ,2 ]
Dang, Xiao [1 ,2 ]
Xu, Qiwu [1 ,2 ]
Zhang, Dongya [2 ]
机构
[1] Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen, Peoples R China
[2] BGI Shenzhen, Shenzhen 518083, Peoples R China
关键词
Maylandia zebra; mitogenome; phylogenetic;
D O I
10.3109/19401736.2015.1074199
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Maylandia zebra, a member of the family cichlid living in individual African lakes, are regarded as a significant evolution model. Recently the genome sequencing had been done, but there is no sufficient information about its mitochondria. Herein, we first assembled the complete mitochondrial genome sequence of Maylandia zebra. It is a 16582 bp long sequence with most mitogenome's characteristic structure, 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 putative control region. The GC-content of our fresh sequence is 45.86%, similar to closely related species Oreochromis niloticus. The accuracy and utility of new determined mitogenome sequences can be verified by the phylogenetic analysis, based on whole mitogenome alignment with Neolamprologus brichardi, Pseudotropheus crabro, Oreochromis niloticu, which is closest relative to Maylandia zebra, and 6 others. Using the full mitogenome, we expect to address taxonomic issues and study the related evolution events. Moreover, this is the first report of the mitogenome of genus Maylandia.
引用
收藏
页码:3521 / 3522
页数:2
相关论文
共 8 条
[1]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[2]   The genomic substrate for adaptive radiation in African cichlid fish [J].
Brawand, David ;
Wagner, Catherine E. ;
Li, Yang I. ;
Malinsky, Milan ;
Keller, Irene ;
Fan, Shaohua ;
Simakov, Oleg ;
Ng, Alvin Y. ;
Lim, Zhi Wei ;
Bezault, Etienne ;
Turner-Maier, Jason ;
Johnson, Jeremy ;
Alcazar, Rosa ;
Noh, Hyun Ji ;
Russell, Pamela ;
Aken, Bronwen ;
Alfoeldi, Jessica ;
Amemiya, Chris ;
Azzouzi, Naoual ;
Baroiller, Jean-Francois ;
Barloy-Hubler, Frederique ;
Berlin, Aaron ;
Bloomquist, Ryan ;
Carleton, Karen L. ;
Conte, Matthew A. ;
D'Cotta, Helena ;
Eshel, Orly ;
Gaffney, Leslie ;
Galibert, Francis ;
Gante, Hugo F. ;
Gnerre, Sante ;
Greuter, Lucie ;
Guyon, Richard ;
Haddad, Natalie S. ;
Haerty, Wilfried ;
Harris, Rayna M. ;
Hofmann, Hans A. ;
Hourlier, Thibaut ;
Hulata, Gideon ;
Jaffe, David B. ;
Lara, Marcia ;
Lee, Alison P. ;
MacCallum, Iain ;
Mwaiko, Salome ;
Nikaido, Masato ;
Nishihara, Hidenori ;
Ozouf-Costaz, Catherine ;
Penman, David J. ;
Przybylski, Dariusz ;
Rakotomanga, Michaelle .
NATURE, 2014, 513 (7518) :375-+
[3]   Complete mitochondrial DNA sequences of the Nile tilapia (Oreochromis niloticus) and Blue tilapia (Oreochromis aureus): genome characterization and phylogeny applications [J].
He, Anyuan ;
Luo, Yongju ;
Yang, Hong ;
Liu, Liping ;
Li, Sifa ;
Wang, Chenghui .
MOLECULAR BIOLOGY REPORTS, 2011, 38 (03) :2015-2021
[4]   Adaptive evolution and explosive speciation: The cichlid fish model [J].
Kocher, TD .
NATURE REVIEWS GENETICS, 2004, 5 (04) :288-298
[5]   Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids [J].
Loh, Yong-Hwee E. ;
Katz, Lee S. ;
Mims, Meryl C. ;
Kocher, Thomas D. ;
Yi, Soojin V. ;
Streelman, J. Todd .
GENOME BIOLOGY, 2008, 9 (07)
[6]  
Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]
[7]   On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence [J].
Won, YJ ;
Sivasundar, A ;
Wang, Y ;
Hey, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 :6581-6586
[8]   Automatic annotation of organellar genomes with DOGMA [J].
Wyman, SK ;
Jansen, RK ;
Boore, JL .
BIOINFORMATICS, 2004, 20 (17) :3252-3255