Objective: To compare the biometric parameters provided by A-scan ultrasonography and the Lenstar optical biometer in guinea pig eyes, including anterior segment depth (ASD), lens thickness (LT), vitreous chamber depth (VCD), and axial length (AL), and differences of them between treated form deprivation (FD) eyes and untreated fellow eyes after 4 weeks of FD. Methods: Three-week-old guinea pigs (N - 41) were subjected to biometric measurements before monocular FD (baseline) and after a 4-week FD. Statistical analyses including within-subject standard deviation (SDwithin), coefficient of variation (CV), and intraclass correlation coefficient (ICC), used to evaluate repeatability for both the A-scan ultrasonography and the Lenstar individually, and correlation and Bland-Altman analyses were used to assess agreement between the two methods. The absolute values of ASD, LT, VCD and AL as measured by the two devices were compared, and the differences of them between treated (T) and untreated fellow (F) eyes (Delta ASD, Delta LT, Delta VCD and Delta AL) (Delta = T-F) were compared between the two devices after 4 weeks of FD. Results: Measurements by the Lenstar (ICC: 0.923-0.994) were more repeatable than A-scan ultrasonography (ICC: 0.825-0.870). There was a high correlation for AL (r = 0.851, P < 0.001), a moderate correlation for VCD (r = 0.571, P < 0.001) and LT (r = 0.423, P < 0.001), and a low correlation for ASD (r = 0.230, P < 0.01) between the two devices. The values for ASD, VCD and AL measured by A-scan ultrasonography were larger than those measured by the Lenstar (all, P < 0.001), while LT provided by A-scan ultrasonography was much smaller than that of the Lenstar (P < 0.001). Bland-Altman plots showed poor agreement of absolute values of the four parameters between the two devices. Moreover, there was a high correlation between both methods for Delta AL (r = 0.704, P < 0.001), a moderate correlation for Delta VCD (r = 0.534, P < 0.001) and Delta ASD (r = 0.574, P < 0.001), and no correlation for ALT (r = 0.303, P = 0.054). The Delta ASD,Delta LT, and Delta AL measurements obtained by A-scan ultrasonography were greater than those obtained by the Lenstar (all, P < 0.001), while Delta VCD was mildly smaller using A-scan ultrasonography (P < 0.05). Bland-Altman plots illustrated there is good agreement of Delta AL, Delta VCD, Delta ASD, and Delta LT between the two devices. Conclusions: The Lenstar exhibited better repeatability and provided smaller measurements for Delta L, VCD and ASD than A-scan ultrasonography. Furthermore, a high correlation and a good agreement for the Delta AL was observed between the two devices after a period of FD. In summary, the two devices cannot replace each other directly to obtain absolute values of ASD, LT, VCD and AL, but the Lenstar still can serve as an option in measuring Delta AL between eyes in guinea pig myopia model.