Genome-Wide Identification, Characterization, and Expression Analysis of TUBBY Gene Family in Wheat (Triticum aestivum L.) under Biotic and Abiotic Stresses

被引:7
作者
Altaf, Adil [1 ]
Zada, Ahmad [2 ]
Hussain, Shahid [3 ]
Gull, Sadia [4 ]
Ding, Yonggang [1 ]
Tao, Rongrong [1 ]
Zhu, Min [1 ,5 ]
Zhu, Xinkai [1 ,5 ,6 ]
机构
[1] Yangzhou Univ, Jiangsu Key Lab Crop Genet & Physiol, Jiangsu Key Lab Crop Cultivat & Physiol, Wheat Res Ctr,Coll Agr, Yangzhou 225009, Jiangsu, Peoples R China
[2] Yangzhou Univ, Coll Biosci & Biotechnol, Yangzhou 225009, Jiangsu, Peoples R China
[3] Yangzhou Univ, Coll Agr, Yangzhou 225009, Jiangsu, Peoples R China
[4] Yangzhou Univ, Coll Hort & Plant Protect, Yangzhou 225009, Jiangsu, Peoples R China
[5] Yangzhou Univ, Coinnovat Ctr Modern Prod Technol Grain Crops, Yangzhou 225009, Jiangsu, Peoples R China
[6] Yangzhou Univ, Minist Educ China, Joint Int Res Lab Agr & Agriprod Safety, Yangzhou 225009, Jiangsu, Peoples R China
来源
AGRONOMY-BASEL | 2022年 / 12卷 / 05期
基金
中国国家自然科学基金;
关键词
wheat; temperature stress; hormonal stress; genes; TaTLPs; TRANSCRIPTION FACTOR; ARABIDOPSIS; PROTEINS; RICE;
D O I
10.3390/agronomy12051121
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
The TUBBY gene family is a group of transcription factors found in animals and plants with many functions. TLP genes have a significant role in response to different abiotic stresses. However, there is limited knowledge regarding the TUBBY gene family in T. aestivum. Here we identified 40 TaTLP genes in wheat to reveal their potential function. This study found that TUBBY (TaTLP) genes are highly conserved in wheat. The GO analysis of TaTLP genes revealed their role in growth and stress responses. Promoter analysis revealed that most TaTLPs participate in hormone and abiotic stress responses. The heatmap analysis also showed that TaTLP genes showed expression under various hormonal and abiotic stress conditions. Several genes were upregulated under different hormonal and temperature stresses. The qRT-PCR analysis confirmed our hypotheses. The results clearly indicate that various TaTLP genes showed high expression under temperature stress conditions. Furthermore, the results showed that TaTLP genes are expressed in multiple tissues with different expression patterns. For the first time in wheat, we present a comprehensive TaTLP analysis. These findings provide valuable clues for future research about the role of TLPs in the abiotic stress process in plants. Overall, the research outcomes can serve as a model for improving wheat quality through genetic engineering.
引用
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页数:16
相关论文
共 39 条
[1]   Effects of Environmental Stresses (Heat, Salt, Waterlogging) on Grain Yield and Associated Traits of Wheat under Application of Sulfur-Coated Urea [J].
Altaf, Adil ;
Zhu, Xinkai ;
Zhu, Min ;
Quan, Ma ;
Irshad, Sana ;
Xu, Dongyi ;
Aleem, Muhammad ;
Zhang, Xinbo ;
Gull, Sadia ;
Li, Fujian ;
Shah, Amir Zaman ;
Zada, Ahmad .
AGRONOMY-BASEL, 2021, 11 (11)
[2]   STUDY OF THE EFFECT OF PEG-6000 IMPOSED DROUGHT STRESS ON WHEAT (Triticum aestivum L.) CULTIVARS USING RELATIVE WATER CONTENT (RWC) AND PROLINE CONTENT ANALYSIS [J].
Altaf, Adil ;
Gull, Sadia ;
Zhu, Xinkai ;
Zhu, Min ;
Rasool, Ghulam ;
Ibrahim, Muhi Eldeen Hussien ;
Aleem, Muhammad ;
Uddin, Saleem ;
Saeed, Aamir ;
Shah, Amir Zaman ;
Zada, Ahmad ;
Quan, Ma ;
Ding Yonggang ;
Xu, Dongyi ;
Li Chen .
PAKISTAN JOURNAL OF AGRICULTURAL SCIENCES, 2021, 58 (01) :357-367
[3]   MEME SUITE: tools for motif discovery and searching [J].
Bailey, Timothy L. ;
Boden, Mikael ;
Buske, Fabian A. ;
Frith, Martin ;
Grant, Charles E. ;
Clementi, Luca ;
Ren, Jingyuan ;
Li, Wilfred W. ;
Noble, William S. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :W202-W208
[4]   Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress [J].
Bano, Nasreen ;
Fakhrah, Shafquat ;
Mohanty, Chandra Sekhar ;
Bag, Sumit Kumar .
FRONTIERS IN PLANT SCIENCE, 2021, 12
[5]   Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress [J].
Bao, Yan ;
Song, Wei-Meng ;
Jin, Yan-Li ;
Jiang, Chun-Mei ;
Yang, Yang ;
Li, Bei ;
Huang, Wei-Jie ;
Liu, Hua ;
Zhang, Hong-Xia .
PLANT MOLECULAR BIOLOGY, 2014, 86 (4-5) :471-483
[6]   Implication of tubby proteins as transcription factors by structure-based functional analysis [J].
Boggon, TJ ;
Shan, WS ;
Santagata, S ;
Myers, SC ;
Shapiro, L .
SCIENCE, 1999, 286 (5447) :2119-2125
[7]   expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform [J].
Borrill, Philippa ;
Ramirez-Gonzalez, Ricardo ;
Uauy, Cristobal .
PLANT PHYSIOLOGY, 2016, 170 (04) :2172-2186
[8]   Decreased CO2 availability and inactivation of Rubisco limit photosynthesis in cotton plants under heat and drought stress in the field [J].
Carmo-Silva, A. Elizabete ;
Gore, Michael A. ;
Andrade-Sanchez, Pedro ;
French, Andrew N. ;
Hunsaker, Doug J. ;
Salvucci, Michael E. .
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2012, 83 :1-11
[9]   Tubby proteins: The plot thickens [J].
Carroll, K ;
Gomez, C ;
Shapiro, L .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2004, 5 (01) :55-63
[10]   Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses [J].
Chen, WQ ;
Provart, NJ ;
Glazebrook, J ;
Katagiri, F ;
Chang, HS ;
Eulgem, T ;
Mauch, F ;
Luan, S ;
Zou, GZ ;
Whitham, SA ;
Budworth, PR ;
Tao, Y ;
Xie, ZY ;
Chen, X ;
Lam, S ;
Kreps, JA ;
Harper, JF ;
Si-Ammour, A ;
Mauch-Mani, B ;
Heinlein, M ;
Kobayashi, K ;
Hohn, T ;
Dangl, JL ;
Wang, X ;
Zhu, T .
PLANT CELL, 2002, 14 (03) :559-574