Complete chloroplast genome of Lamium takesimese Nakai (Lamiaceae): an endemic species in South Korea

被引：0
作者：
Park, Kyu Tae [1 ]
Shin, Jaehang [2 ]
Park, Seonjoo [1 ]
机构：
[1] Yeungnam Univ, Dept Life Sci, Gyongsan 38541, Gyeongbuk, South Korea
[2] Univ Utah, Sch Med, Dept Biomed Informat, Salt Lake City, UT USA
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
基金：
新加坡国家研究基金会;
关键词：
Lamium takesimense; Lamiaceae; complete chloroplast genome; endemic species; Ulleung island; ANNOTATION;
D O I：
10.1080/23802359.2019.1667899
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
The complete chloroplast genome of Lamium takesimense (Lamiaceae), an endemic species in South Korea, are presented in this article. The genome size is 150,626 bp in length, with 38.6% of GC content. It consists a large single-copy (LSC) region (82,527bp) and a small single-copy region (SSC) (17,185bp) which were separated by two inverted repeat (IRs) regions (25,457bp). The complete chloroplast genome contains 111 unique genes, including 77 protein-coding genes, 4 rRNA genes, and 30 tRNA genes.
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页码：3216 / 3217
页数：2
相关论文
共 7 条
  • [1] Molecular phylogeny and taxonomy of the genus Lamium L. (Lamiaceae): Disentangling origins of presumed allotetraploids
    Bendiksby, Mika
    Brysting, Anne K.
    Thorbek, Lisbeth
    Gussarova, Galina
    Ryding, Olof
    [J]. TAXON, 2011, 60 (04) : 986 - 1000
  • [2] CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
    Liu, Chang
    Shi, Linchun
    Zhu, Yingjie
    Chen, Haimei
    Zhang, Jianhui
    Lin, Xiaohan
    Guan, Xiaojun
    [J]. BMC GENOMICS, 2012, 13
  • [3] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    Lowe, TM
    Eddy, SR
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
  • [4] SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
    Luo, Ruibang
    Liu, Binghang
    Xie, Yinlong
    Li, Zhenyu
    Huang, Weihua
    Yuan, Jianying
    He, Guangzhu
    Chen, Yanxiang
    Pan, Qi
    Liu, Yunjie
    Tang, Jingbo
    Wu, Gengxiong
    Zhang, Hao
    Shi, Yujian
    Liu, Yong
    Yu, Chang
    Wang, Bo
    Lu, Yao
    Han, Changlei
    Cheung, David W.
    Yiu, Siu-Ming
    Peng, Shaoliang
    Zhu Xiaoqian
    Liu, Guangming
    Liao, Xiangke
    Li, Yingrui
    Yang, Huanming
    Wang, Jian
    Lam, Tak-Wah
    Wang, Jun
    [J]. GIGASCIENCE, 2012, 1
  • [5] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    Stamatakis, Alexandros
    [J]. BIOINFORMATICS, 2014, 30 (09) : 1312 - 1313
  • [6] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255
  • [7] Yalcin F.N., 2006, J PHARM SCI, V31, P43
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