Dynamic 3D visualization of active protein′s motion using diffracted X-ray tracking

被引:4
|
作者
Sekiguchi, Hiroshi [1 ]
Sasaki, Yuji C. [1 ,2 ]
机构
[1] Japan Synchrotron Radiat Res Inst, Ctr Synchrotron Radiat Res, Diffract & Scattering Div, 1-1-1 Kouto, Sayo, Hyogo 6795198, Japan
[2] Univ Tokyo, Grad Sch Frontier Sci, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778561, Japan
关键词
PHOTON-CORRELATION SPECTROSCOPY; GROUP-II CHAPERONIN; NANO-VISUALIZATION; CRYO-EM; STATE; MECHANISM; BINDING; HYDROLYSIS; MICROSCOPY; RESOLUTION;
D O I
10.7567/1347-4065/ab56fd
中图分类号
O59 [应用物理学];
学科分类号
摘要
Diffracted X-ray tracking (DXT) is one of the single-molecule techniques for investigating intra-molecule dynamics of functional proteins at the single-molecule level with nanocrystal and synchrotron X-ray. In DXT, a nanocrystal is immobilized on a target protein, used as a motion probe and the trajectory of its diffraction spot is analyzed as the internal motion of the protein. It can detect atomic-scale dynamic motion of the protein with several tens of microseconds time resolution. Therefore, DXT is expected to be a powerful tool to investigate protein inter-molecule dynamics, especially for cooperative motion analysis in multimeric proteins. In this article, we review the characteristic features and recent progress of DXT.
引用
收藏
页数:7
相关论文
共 50 条
  • [1] Visualization of the 3D structure of the graft union of grapevine using X-ray tomography
    Milien, Mayeul
    Renault-Spilmont, Anne-Sophie
    Cookson, Sarah Jane
    Sarrazin, Amelie
    Verdeil, Jean-Luc
    SCIENTIA HORTICULTURAE, 2012, 144 : 130 - 140
  • [2] Molecular Dynamics Mappings of the CCT/TRiC Complex-Mediated Protein Folding Cycle Using Diffracted X-ray Tracking
    Araki, Kazutaka
    Watanabe-Nakayama, Takahiro
    Sasaki, Daisuke
    Sasaki, Yuji C.
    Mio, Kazuhiro
    Gianni, Stefano
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (19)
  • [3] 3D visualization of XFEL beam focusing properties using LiF crystal X-ray detector
    Pikuz, Tatiana
    Faenov, Anatoly
    Matsuoka, Takeshi
    Matsuyama, Satoshi
    Yamauchi, Kazuto
    Ozaki, Norimasa
    Albertazzi, Bruno
    Inubushi, Yuichi
    Yabashi, Makina
    Tono, Kensuke
    Sato, Yuya
    Yumoto, Hirokatsu
    Ohashi, Haruhiko
    Pikuz, Sergei
    Grum-Grzhimailo, Alexei N.
    Nishikino, Masaharu
    Kawachi, Tetsuya
    Ishikawa, Tetsuya
    Kodama, Ryosuke
    SCIENTIFIC REPORTS, 2015, 5
  • [4] Diffracted X-ray Tracking for Observing the Internal Motions of Individual Protein Molecules and Its Extended Methodologies
    Sasaki, Yuji C.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (19)
  • [5] 3D Nanoprinted Plastic Kinoform X-Ray Optics
    Sanli, Umut T.
    Ceylan, Hakan
    Bykova, Iuliia
    Weigand, Markus
    Sitti, Metin
    Schuetz, Gisela
    Keskinbora, Kahraman
    ADVANCED MATERIALS, 2018, 30 (36)
  • [6] An instrument for 3D x-ray nano-imaging
    Holler, M.
    Raabe, J.
    Diaz, A.
    Guizar-Sicairos, M.
    Quitmann, C.
    Menzel, A.
    Bunk, O.
    REVIEW OF SCIENTIFIC INSTRUMENTS, 2012, 83 (07):
  • [7] 3D imaging of sugarcane bagasse using X-ray microtomography
    Isaac, A.
    Sket, F.
    Driemeier, C.
    Rocha, G. J. M.
    INDUSTRIAL CROPS AND PRODUCTS, 2013, 49 : 790 - 793
  • [8] 3D diffractive imaging of nanoparticle ensembles using an x-ray laser
    Ayyer, Kartik
    Xavier, P. Lourdu
    Bielecki, Johan
    Shen, Zhou
    Daurer, Benedikt J.
    Samanta, Amit K.
    Awel, Salah
    Bean, Richard
    Barty, Anton
    Bergemann, Martin
    Ekeberg, Tomas
    Estillore, Armando D.
    Fangohr, Hans
    Giewekemeyer, Klaus
    Hunter, Mark S.
    Karnevskiy, Mikhail
    Kirian, Richard A.
    Kirkwood, Henry
    Kim, Yoonhee
    Koliyadu, Jayanath
    Lange, Holger
    Letrun, Romain
    Lubke, Jannik
    Michelat, Thomas
    Morgan, Andrew J.
    Roth, Nils
    Sato, Tokushi
    Sikorski, Margin
    Schulz, Florian
    Spence, John C. H.
    Vagovic, Patrik
    Wollweber, Tamme
    Worbs, Lena
    Yefanov, Oleksandr
    Zhuang, Yulong
    Maia, Filipe R. N. C.
    Horke, Daniel A.
    Kuepper, Jochen
    Loh, N. Duane
    Mancuso, Adrian P.
    Chapman, Henry N.
    OPTICA, 2021, 8 (01): : 15 - 23
  • [9] Laboratory X-ray Microscopy of 3D Nanostructures in the Hard X-ray Regime Enabled by a Combination of Multilayer X-ray Optics
    Lechowski, Bartlomiej
    Kutukova, Kristina
    Grenzer, Joerg
    Panchenko, Iuliana
    Krueger, Peter
    Clausner, Andre
    Zschech, Ehrenfried
    NANOMATERIALS, 2024, 14 (02)
  • [10] Feasibility of radiosurgery dosimetry using NIPAM 3D dosimeters and x-ray CT
    Adamson, Justus
    Carroll, Jaclyn
    Trager, Michael
    Yoon, Paul
    Kodra, Jacob
    Yin, Fang-Fang
    Maynard, Evan
    Hilts, Michelle
    Oldham, Mark
    Jirasik, Andrew
    10TH INTERNATIONAL CONFERENCE ON 3D RADIATION DOSIMETRY (IC3DDOSE), 2019, 1305