Potential disruption of protein-protein interactions by graphene oxide

被引:28
|
作者
Feng, Mei [1 ]
Kang, Hongsuk [2 ]
Yang, Zaixing [3 ,4 ,5 ]
Luan, Binquan [2 ]
Zhou, Ruhong [1 ,2 ,6 ]
机构
[1] Zhejiang Univ, Dept Phys, Inst Quantitat Biol, Hangzhou 310027, Peoples R China
[2] IBM Thomas J Watson Res Ctr, Computat Biol Ctr, Yorktown Hts, NY 10598 USA
[3] Soochow Univ, Inst Quantitat Biol & Med, SRMP, Suzhou 215123, Peoples R China
[4] Soochow Univ, RAD X, Suzhou 215123, Peoples R China
[5] Soochow Univ, Collaborat Innovat Ctr Radiat Med Jiangsu Higher, Suzhou 215123, Peoples R China
[6] Columbia Univ, Dept Chem, New York, NY 10027 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2016年 / 144卷 / 22期
基金
中国国家自然科学基金;
关键词
DNA-BINDING DOMAIN; IMMUNODEFICIENCY-VIRUS TYPE-1; HYDROPHOBIC GRAPHITE SURFACE; IONIC COMPLEMENTARY PEPTIDE; INTEGRASE PROTEIN; HIV-1; INTEGRASE; TERMINAL DOMAINS; ADSORPTION; SIMULATION; CELLS;
D O I
10.1063/1.4953562
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Graphene oxide (GO) is a promising novel nanomaterial with a wide range of potential biomedical applications due to its many intriguing properties. However, very little research has been conducted to study its possible adverse effects on protein-protein interactions (and thus subsequent toxicity to human). Here, the potential cytotoxicity of GO is investigated at molecular level using large-scale, all-atom molecular dynamics simulations to explore the interaction mechanism between a protein dimer and a GO nanosheet oxidized at different levels. Our theoretical results reveal that GO nanosheet could intercalate between the two monomers of HIV-1 integrase dimer, disrupting the protein-protein interactions and eventually lead to dimer disassociation as graphene does [B. Luan et al., ACS Nano 9(1), 663 (2015)], albeit its insertion process is slower when compared with graphene due to the additional steric and attractive interactions. This study helps to better understand the toxicity of GO to cell functions which could shed light on how to improve its biocompatibility and biosafety for its wide potential biomedical applications. Published by AIP Publishing.
引用
收藏
页数:6
相关论文
共 50 条
  • [22] Protein-protein interactions
    Williamson, Mike P.
    Sutcliffe, Michael J.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2010, 38 : 875 - 878
  • [23] PROTEIN-PROTEIN INTERACTIONS
    WAUGH, DF
    ADVANCES IN PROTEIN CHEMISTRY, 1954, 9 : 325 - 437
  • [24] Protein-protein interactions
    Netterwald, James
    Genetic Engineering and Biotechnology News, 2010, 30 (05):
  • [25] Protein-protein interactions involving inducible nitric oxide synthase
    Zhang, W
    Kuncewicz, T
    Yu, ZY
    Zou, L
    Xu, X
    Kone, BC
    ACTA PHYSIOLOGICA SCANDINAVICA, 2003, 179 (02): : 137 - 142
  • [26] Screening for nitric oxide-dependent protein-protein interactions
    Matsumoto, A
    Comatas, KE
    Liu, LM
    Stamler, JS
    SCIENCE, 2003, 301 (5633) : 657 - 661
  • [27] Citrulline-nitric oxide cycle protein-protein interactions
    Flam, Brenda R.
    Samreen, Naziya
    Strom, Joel A.
    Solomonson, Larry P.
    Eichler, Duane C.
    FASEB JOURNAL, 2007, 21 (05): : A624 - A624
  • [28] Screening for nitric oxide-dependent protein-protein interactions
    Matsumoto, A
    Comatas, KE
    Liu, LM
    Stamler, JS
    NITRIC OXIDE-BIOLOGY AND CHEMISTRY, 2004, 11 (01): : 54 - 54
  • [29] Disruption of protein-protein interactions using nanoparticles: inhibition of cytochrome c peroxidase
    Bayraktar, H
    Ghosh, PS
    Rotello, VM
    Knapp, MJ
    CHEMICAL COMMUNICATIONS, 2006, (13) : 1390 - 1392
  • [30] An improved method of potential of mean force for protein-protein interactions
    Su Yu
    Li WenFei
    Zhang Jian
    Wang Jun
    Wang Wei
    CHINESE SCIENCE BULLETIN, 2008, 53 (08): : 1145 - 1151