Single-cell RNA-seq reveals fibroblast heterogeneity and increased mesenchymal fibroblasts in human fibrotic skin diseases

被引:252
作者
Deng, Cheng-Cheng [1 ]
Hu, Yong-Fei [1 ,2 ]
Zhu, Ding-Heng [1 ]
Cheng, Qing [1 ]
Gu, Jing-Jing [1 ]
Feng, Qing-Lan [1 ]
Zhang, Li-Xue [1 ]
Xu, Ying-Ping [1 ]
Wang, Dong [1 ,2 ]
Rong, Zhili [1 ,3 ,4 ]
Yang, Bin [1 ]
机构
[1] Southern Med Univ, Dermatol Hosp, Guangzhou, Peoples R China
[2] Southern Med Univ, Sch Basic Med Sci, Dept Bioinformat, Guangzhou, Peoples R China
[3] Southern Med Univ, Canc Res Inst, Sch Basic Med Sci, Guangzhou, Peoples R China
[4] Minist Educ, Key Lab Organ Failure Res, Natl Clin Res Ctr Kidney Dis, State Key Lab Organ Failure Res, Guangzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
TRANSCRIPTION FACTORS; PERIOSTIN; FIBROSIS; EXPRESSION; KELOIDS; DIFFERENTIATION; PROLIFERATION; MECHANISMS; REGULATORS;
D O I
10.1038/s41467-021-24110-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Fibrotic skin disease represents a major global healthcare burden, characterized by fibroblast hyperproliferation and excessive accumulation of extracellular matrix. Fibroblasts are found to be heterogeneous in multiple fibrotic diseases, but fibroblast heterogeneity in fibrotic skin diseases is not well characterized. In this study, we explore fibroblast heterogeneity in keloid, a paradigm of fibrotic skin diseases, by using single-cell RNA-seq. Our results indicate that keloid fibroblasts can be divided into 4 subpopulations: secretory-papillary, secretory-reticular, mesenchymal and pro-inflammatory. Interestingly, the percentage of mesenchymal fibroblast subpopulation is significantly increased in keloid compared to normal scar. Functional studies indicate that mesenchymal fibroblasts are crucial for collagen overexpression in keloid. Increased mesenchymal fibroblast subpopulation is also found in another fibrotic skin disease, scleroderma, suggesting this is a broad mechanism for skin fibrosis. These findings will help us better understand skin fibrotic pathogenesis, and provide potential targets for fibrotic disease therapies. Fibroblasts are found to be heterogeneous in multiple fibrotic diseases, but fibroblast heterogeneity in fibrotic skin diseases is not well characterized. Here the authors employ scRNA-seq to explore fibroblast heterogeneity in keloid, a paradigm of fibrotic skin diseases.
引用
收藏
页数:16
相关论文
共 61 条
[1]   Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis [J].
Adams, Taylor S. ;
Schupp, Jonas C. ;
Poli, Sergio ;
Ayaub, Ehab A. ;
Neumark, Nir ;
Ahangari, Farida ;
Chu, Sarah G. ;
Raby, Benjamin A. ;
DeTullis, Giuseppe ;
Januszyk, Michael ;
Duan, Qiaonan ;
Arnett, Heather A. ;
Siddiqui, Asim ;
Washko, George R. ;
Homer, Robert ;
Yan, Xiting ;
Rosas, Ivan O. ;
Kaminski, Naftali .
SCIENCE ADVANCES, 2020, 6 (28)
[2]   Keloids: The paradigm of skin fibrosis - Pathomechanisms and treatment [J].
Andrews, Jonathan P. ;
Marttala, Jaana ;
Macarak, Edward ;
Rosenbloom, Joel ;
Uitto, Jouni .
MATRIX BIOLOGY, 2016, 51 :37-46
[3]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[4]   Reverse engineering of regulatory networks in human B cells [J].
Basso, K ;
Margolin, AA ;
Stolovitzky, G ;
Klein, U ;
Dalla-Favera, R ;
Califano, A .
NATURE GENETICS, 2005, 37 (04) :382-390
[5]   Skin scarring [J].
Bayat, A ;
McGrouther, DA ;
Ferguson, MWJ .
BRITISH MEDICAL JOURNAL, 2003, 326 (7380) :88-92
[6]   Keloids and Hypertrophic Scars: Pathophysiology, Classification, and Treatment [J].
Berman, Brian ;
Maderal, Andrea ;
Raphael, Brian .
DERMATOLOGIC SURGERY, 2017, 43 :S3-S18
[7]   Periostin action in bone [J].
Bonnet, Nicolas ;
Garnero, Patrick ;
Ferrari, Serge .
MOLECULAR AND CELLULAR ENDOCRINOLOGY, 2016, 432 (0C) :85-92
[8]   Statistical significance of variables driving systematic variation in high-dimensional data [J].
Chung, Neo Christopher ;
Storey, John D. .
BIOINFORMATICS, 2015, 31 (04) :545-554
[9]   A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity [J].
D'Alessio, Ana C. ;
Fan, Zi Peng ;
Wert, Katherine J. ;
Baranov, Petr ;
Cohen, Malkiel A. ;
Saini, Janmeet S. ;
Cohick, Evan ;
Charniga, Carol ;
Dadon, Daniel ;
Hannett, Nancy M. ;
Young, Michael J. ;
Temple, Sally ;
Jaenisch, Rudolf ;
Lee, Tong Ihn ;
Young, Richard A. .
STEM CELL REPORTS, 2015, 5 (05) :763-775
[10]   The development, patterning and evolution of neural crest cell differentiation into cartilage and bone [J].
Dash, Soma ;
Trainor, Paul A. .
BONE, 2020, 137