Quantifying transcription factor-DNA binding in live mouse embryos with photoactivatable fluorescence correlation spectroscopy (paFCS)

被引:0
|
作者
Zhao, Ziqing [1 ]
White, Melanie [1 ]
Alvarez, Yanina [2 ]
Zenker, Jennifer [1 ]
Levi, Valeria [2 ]
Bissiere, Stephanie [1 ]
Plachta, Nicolas [1 ]
机构
[1] ASTAR, Inst Mol & Cell Biol IMCB, Singapore, Singapore
[2] Univ Buenos Aires, Buenos Aires, DF, Argentina
关键词
D O I
10.1016/j.mod.2017.04.170
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
PS2.70
引用
收藏
页码:S73 / S73
页数:1
相关论文
共 50 条
  • [1] Quantifying transcription factor-DNA binding in single cells in vivo with photoactivatable fluorescence correlation spectroscopy
    Zhao, Ziqing Winston
    White, Melanie D.
    Alvarez, Yanina D.
    Zenker, Jennifer
    Bissiere, Stephanie
    Plachta, Nicolas
    NATURE PROTOCOLS, 2017, 12 (07) : 1458 - 1471
  • [2] Quantifying transcription factor–DNA binding in single cells in vivo with photoactivatable fluorescence correlation spectroscopy
    Ziqing Winston Zhao
    Melanie D White
    Yanina D Alvarez
    Jennifer Zenker
    Stephanie Bissiere
    Nicolas Plachta
    Nature Protocols, 2017, 12 : 1458 - 1471
  • [3] Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy
    Papadopoulos, Dimitrios K.
    Krmpot, Aleksandar J.
    Nikolic, Stanko N.
    Krautz, Robert
    Terenius, Lars
    Tomancak, Pavel
    Rigler, Rudolf
    Gehring, Walter J.
    Vukojevic, Vladana
    MECHANISMS OF DEVELOPMENT, 2015, 138 : 218 - 225
  • [4] A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues
    Cammack, Alexander J.
    Moudgil, Arnav
    Chen, Jiayang
    Vasek, Michael J.
    Shabsovich, Mark
    McCullough, Katherine
    Yen, Allen
    Lagunas, Tomas
    Maloney, Susan E.
    He, June
    Chen, Xuhua
    Hooda, Misha
    Wilkinson, Michael N.
    Miller, Timothy M.
    Mitra, Robi D.
    Dougherty, Joseph D.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (18) : 10003 - 10014
  • [5] Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding
    Zhao, Jingkang
    Li, Dongshunyi
    Seo, Jungkyun
    Allen, Andrew S.
    Gordan, Raluca
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB 2017, 2017, 10229 : 336 - 352
  • [6] Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays
    Quan, Lijun
    Mei, Jie
    He, Ruji
    Sun, Xiaoyu
    Nie, Liangpeng
    Li, Kailong
    Lyu, Qiang
    IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2021, 25 (07) : 2811 - 2819
  • [7] Transcription factor-DNA binding: beyond binding site motifs
    Inukai, Sachi
    Kock, Kian Hong
    Bulyk, Martha L.
    CURRENT OPINION IN GENETICS & DEVELOPMENT, 2017, 43 : 110 - 119
  • [8] pH dynamics regulates transcription factor-DNA binding
    Kisor, Kyle
    Barber, Diane
    BIOPHYSICAL JOURNAL, 2023, 122 (03) : 214A - 215A
  • [9] Probing transcription factor diffusion dynamics in the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy
    Gurpreet Kaur
    Mauro W. Costa
    Christian M. Nefzger
    Juan Silva
    Juan Carlos Fierro-González
    Jose M. Polo
    Toby D.M. Bell
    Nicolas Plachta
    Nature Communications, 4
  • [10] Probing transcription factor diffusion dynamics in the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy
    Kaur, Gurpreet
    Costa, Mauro W.
    Nefzger, Christian M.
    Silva, Juan
    Fierro-Gonzalez, Juan Carlos
    Polo, Jose M.
    Bell, Toby D. M.
    Plachta, Nicolas
    NATURE COMMUNICATIONS, 2013, 4