Identification of potent virtual leads to design novel indoleamine 2,3-dioxygenase inhibitors: Pharmacophore modeling and molecular docking studies

被引:28
作者
John, Shalini
Thangapandian, Sundarapandian
Sakkiah, Sugunadevi
Lee, Keun Woo [1 ]
机构
[1] Gyeongsang Natl Univ, Environm Biotechnol Natl Core Res Ctr, Dept Biochem, Jinju 660701, South Korea
关键词
Indoleamine 2,3-dioxygenase; Pharmacophore hypothesis; Virtual screening; Molecular docking; TRYPTOPHAN-METABOLISM; QUINOLINIC ACID; COMPETITIVE INHIBITORS; DENDRITIC CELLS; EXIGUAMINE-A; PREDICTION; TOLERANCE; BRAIN; KYNURENINES; DERIVATIVES;
D O I
10.1016/j.ejmech.2010.05.057
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Indoleamine 2,3-dioxygenase, a heme-containing enzyme, is emerging as a vital target for the treatment of cancer, chronic viral infections, and other diseases. The aim of this study is to identify novel scaffolds and utilize them in designing potent IDO inhibitors. Pharmacophore hypotheses were developed. The highly correlating (r = 0.958) hypothesis with two hydrogen bond acceptor, one hydrogen bond donor and one hydrophobic aromatic features was selected, validated and used in virtual screening. Hit compounds were subjected to various drug-like filtrations and molecular docking studies. Finally, three structurally diverse compounds with high GOLD fitness scores and interactions with critical active site amino acids were identified. These final hits may act as potent virtual leads in effective IDO inhibitor designing. (C) 2010 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:4004 / 4012
页数:9
相关论文
共 46 条
  • [1] *ACC INC, 2005, DISC STUD 2 1
  • [2] ANTONIO M, 2007, BIOCHIM BIOPHYS ACTA, V1774, P1058
  • [3] Pharmacophore modeling for protein tyrosine phosphatase 1B inhibitors
    Bharatham, Kavitha
    Bharatham, Nagakumar
    Lee, Keun Woo
    [J]. ARCHIVES OF PHARMACAL RESEARCH, 2007, 30 (05) : 533 - 542
  • [4] HIV inhibits CD4+ T-cell proliferation by inducing indoleamine 2,3-dioxygenase in plasmacytoid dendritic cells
    Boasso, Adriano
    Herbeuval, Jean-Philippe
    Hardy, Andrew W.
    Anderson, Stephanie A.
    Dolan, Matthew J.
    Fuchs, Dietmar
    Shearer, Gene M.
    [J]. BLOOD, 2007, 109 (08) : 3351 - 3359
  • [5] Chemistry and neurochemistry of the kynurenine pathway of tryptophan metabolism
    Botting, NP
    [J]. CHEMICAL SOCIETY REVIEWS, 1995, 24 (06) : 401 - &
  • [6] Exiguamine A, an indoleamine-2,3-dioxygenase (IDO) inhibitor isolated from the marine sponge Neopetrosia exigua
    Brastianos, Harry C.
    Vottero, Eduardo
    Patrick, Brian O.
    Van Soest, Rob
    Matainaho, Teatulohi
    Mauk, A. Grant
    Andersen, Raymond J.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (50) : 16046 - 16047
  • [7] 1-METHYL-DL-TRYPTOPHAN, BETA-(3-BENZOFURANYL)-DL-ALANINE (THE OXYGEN ANALOG OF TRYPTOPHAN), AND BETA-[3-BENZO(B)THIENYL]-DL-ALANINE (THE SULFUR ANALOG OF TRYPTOPHAN) ARE COMPETITIVE INHIBITORS FOR INDOLEAMINE 2,3-DIOXYGENASE
    CADY, SG
    SONO, M
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1991, 291 (02) : 326 - 333
  • [8] Synthesis of indoleamine 2,3-dioxygenase inhibitory analogues of the sponge alkaloid exiguamine A
    Carr, Gavin
    Chung, Marco K. W.
    Mauk, A. Grant
    Andersen, Raymond J.
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2008, 51 (09) : 2634 - 2637
  • [9] Prediction of aqueous solubility of a diverse set of compounds using quantitative structure-property relationships
    Cheng, AL
    Merz, KM
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2003, 46 (17) : 3572 - 3580
  • [10] Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties
    Ertl, P
    Rohde, B
    Selzer, P
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (20) : 3714 - 3717