Molecular Dynamics Simulations Reveal a Dielectric-Responsive Coronal Structure in Protein-Polymer Surfactant Hybrid Nanoconstructs

被引:41
作者
Brogan, Alex P. S. [1 ,2 ]
Sessions, Richard B. [3 ]
Perriman, Adam W. [1 ,2 ,4 ]
Mann, Stephen [1 ,2 ]
机构
[1] Univ Bristol, Sch Chem, Ctr Organized Matter Chem, Bristol BS8 1TS, Avon, England
[2] Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England
[3] Univ Bristol, Sch Biochem, Bristol BS8 1TD, Avon, England
[4] Univ Bristol, Sch Cellular & Mol Med, Bristol BS8 1TD, Avon, England
基金
欧洲研究理事会; 英国工程与自然科学研究理事会; 英国生物技术与生命科学研究理事会;
关键词
MEMBRANE-PROTEIN; LYSOZYME; ATOM;
D O I
10.1021/ja507592b
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Solvent-free liquid proteins are a new class of thermally stable hybrid bionanomaterials that are produced by extensive lyophilization of aqueous solutions of protein-polymer surfactant nanoconjugates followed by thermal annealing. The hybrid constructs, which consist of a globular protein core surrounded by a monolayer of electrostatically coupled polymer surfactant molecules, exhibit nativelike structure, function, and backbone dynamics over a large temperature range. Despite the key importance of the polymer surfactant shell, very little is known about the atomistic structure of the corona and how it influences the phase behavior and properties of these novel nanoscale objects. Here we present molecular dynamics simulations of protein-polymer surfactant nanoconjugates consisting of globular cores of myoglobin or lysozyme and demonstrate that the derived structural parameters are highly consistent with experimental values. We show that the coronal layer structure is responsive to the dielectric constant of the medium and that the mobility of the polymer surfactant molecules is significantly hindered in the solvent-free state, providing a basis for the origins of retained protein dynamics in these novel biofluids. Taken together, our results suggest that the extension of molecular dynamics simulations to hybrid nanoscale objects could be of generic value in diverse areas of soft matter chemistry, bioinspired engineering, and biomolecular nanotechnology.
引用
收藏
页码:16824 / 16831
页数:8
相关论文
共 38 条
[1]   Electrostatic Unfolding and Interactions of Albumin Driven by pH Changes: A Molecular Dynamics Study [J].
Baler, K. ;
Martin, O. A. ;
Carignano, M. A. ;
Ameer, G. A. ;
Vila, J. A. ;
Szleifer, I. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (04) :921-930
[2]   MOLECULAR MECHANISMS OF ACID DENATURATION - THE ROLE OF HISTIDINE-RESIDUES IN THE PARTIAL UNFOLDING OF APOMYOGLOBIN [J].
BARRICK, D ;
HUGHSON, FM ;
BALDWIN, RL .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 237 (05) :588-601
[3]   Squaring the Circle in Peptide Assembly: From Fibers to Discrete Nanostructures by de Novo Design [J].
Boyle, Aimee L. ;
Bromley, Elizabeth H. C. ;
Bartlett, Gail J. ;
Sessions, Richard B. ;
Sharp, Thomas H. ;
Williams, Claire L. ;
Curmi, Paul M. G. ;
Forde, Nancy R. ;
Linke, Heiner ;
Woolfson, Derek N. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (37) :15457-15467
[4]   Isolation of a Highly Reactive β-Sheet-Rich Intermediate of Lysozyme in a Solvent-Free Liquid Phase [J].
Brogan, Alex P. S. ;
Sharma, Kamendra P. ;
Perriman, Adam W. ;
Mann, Stephen .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (28) :8400-8407
[5]   Hyper-thermal stability and unprecedented re-folding of solvent-free liquid myoglobin [J].
Brogan, Alex P. S. ;
Siligardi, Giuliano ;
Hussain, Rohanah ;
Perriman, Adam W. ;
Mann, Stephen .
CHEMICAL SCIENCE, 2012, 3 (06) :1839-1846
[6]   Self-assembly of a simple membrane protein: Coarse-grained molecular dynamics simulations of the influenza M2 channel [J].
Carpenter, Timothy ;
Bond, Peter J. ;
Khalid, Syma ;
Sansom, Mark S. P. .
BIOPHYSICAL JOURNAL, 2008, 95 (08) :3790-3801
[7]  
DASILVA AWS, 2012, BMC RES NOTES, V5
[8]   Molecular Dynamics Simulations of Lipid Membrane Electroporation [J].
Delemotte, Lucie ;
Tarek, Mounir .
JOURNAL OF MEMBRANE BIOLOGY, 2012, 245 (09) :531-543
[9]   Self-Assembling Cages from Coiled-Coil Peptide Modules [J].
Fletcher, Jordan M. ;
Harniman, Robert L. ;
Barnes, Frederick R. H. ;
Boyle, Aimee L. ;
Collins, Andrew ;
Mantell, Judith ;
Sharp, Thomas H. ;
Antognozzi, Massimo ;
Booth, Paula J. ;
Linden, Noah ;
Miles, Mervyn J. ;
Sessions, Richard B. ;
Verkade, Paul ;
Woolfson, Derek N. .
SCIENCE, 2013, 340 (6132) :595-599
[10]   Molecular dynamics simulation of β2-microglobulin in denaturing and stabilizing conditions [J].
Fogolari, Federico ;
Corazza, Alessandra ;
Varini, Nicola ;
Rotter, Matteo ;
Gumral, Devrim ;
Codutti, Luca ;
Rennella, Enrico ;
Viglino, Paolo ;
Bellotti, Vittorio ;
Esposito, Gennaro .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (03) :986-1001