A KNN-Scoring Based Core-Growing Approach to Cluster Analysis

被引:3
作者
Hsieh, T. W. [1 ]
Taur, J. S. [1 ]
Kung, S. Y. [2 ]
机构
[1] Natl Chung Hsing Univ, Dept Elect Engn, Taichung 40227, Taiwan
[2] Princeton Univ, Dept Elect Engn, Princeton, NJ 08544 USA
来源
JOURNAL OF SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY | 2010年 / 60卷 / 01期
关键词
Clustering method; K-nearest neighbor; Core-growing; GENE-EXPRESSION;
D O I
10.1007/s11265-009-0406-8
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
This paper proposes a novel core-growing (CG) clustering method based on scoring k-nearest neighbors (CG-KNN). First, an initial core for each cluster is obtained, and then a tree-like structure is constructed by sequentially absorbing data points into the existing cores according to the KNN linkage score. The CG-KNN can deal with arbitrary cluster shapes via the KNN linkage strategy. On the other hand, it allows the membership of a previously assigned training pattern to be changed to a more suitable cluster. This is supposed to enhance the robustness. Experimental results on four UCI real data benchmarks and Leukemia data sets indicate that the proposed CG-KNN algorithm outperforms several popular clustering algorithms, such as Fuzzy C-means (FCM) (Xu and Wunsch IEEE Transactions on Neural Networks 16:645-678, 2005), Hierarchical Clustering (HC) (Xu and Wunsch IEEE Transactions on Neural Networks 16:645-678, 2005), Self-Organizing Maps (SOM) (Golub et al. Science 286:531-537, 1999; Tamayo et al. Proceedings of the National Academy of Science USA 96:2907, 1999), and Non-Euclidean Norm FCM (NEFCM) (Karayiannis and Randolph-Gips IEEE Transactions On Neural Networks 16, 2005).
引用
收藏
页码:105 / 114
页数:10
相关论文
共 10 条
[1]  
[Anonymous], 2003, Statistical pattern recognition
[2]   A novel kernel method for clustering [J].
Camastra, F ;
Verri, A .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2005, 27 (05) :801-U4
[3]   Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring [J].
Golub, TR ;
Slonim, DK ;
Tamayo, P ;
Huard, C ;
Gaasenbeek, M ;
Mesirov, JP ;
Coller, H ;
Loh, ML ;
Downing, JR ;
Caligiuri, MA ;
Bloomfield, CD ;
Lander, ES .
SCIENCE, 1999, 286 (5439) :531-537
[4]  
Jain A., 1988, ALGORITHM CLUSTERING
[5]   On a certain integral operator with a homogeneous kernel in the space of functions with bounded mean oscillation [J].
Karapetiants, NK ;
Gil, AV .
INTEGRAL TRANSFORMS AND SPECIAL FUNCTIONS, 2005, 16 (5-6) :423-435
[6]  
KUNG SY, 2008, J SIGNAL PROCESSING
[7]   Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation [J].
Tamayo, P ;
Slonim, D ;
Mesirov, J ;
Zhu, Q ;
Kitareewan, S ;
Dmitrovsky, E ;
Lander, ES ;
Golub, TR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (06) :2907-2912
[8]  
TAMAYO P, 2003, EXPRESSION PROFILING
[9]   A comparison of fuzzy clustering approaches for quantification of microarray gene expression [J].
Wang, Yu-Ping ;
Gunampally, Maheswar ;
Chen, Jie ;
Bittel, Douglas ;
Butler, Merlin G. ;
Cai, Wei-Wen .
JOURNAL OF SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY, 2008, 50 (03) :305-320
[10]   Survey of clustering algorithms [J].
Xu, R ;
Wunsch, D .
IEEE TRANSACTIONS ON NEURAL NETWORKS, 2005, 16 (03) :645-678