Characteristics of solid-state nanometre pores fabricated using a transmission electron microscope

被引:151
作者
Kim, Min Jun [1 ]
McNally, Ben
Murata, Kazuyoshi
Meller, Amit
机构
[1] Drexel Univ, Philadelphia, PA 19104 USA
[2] Harvard Univ, Rowland Inst, Cambridge, MA 02142 USA
[3] Boston Univ, Boston, MA 02215 USA
[4] MIT, WI MIT Bioimaging Ctr, Cambridge, MA 02142 USA
关键词
D O I
10.1088/0957-4484/18/20/205302
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Solid-state nanopores can be used to detect nucleic acid structures at the single molecule level. An e-beam has been used to fabricate nanopores in silicon nitride and silicon dioxide membranes, but the pore formation kinetics, and hence its final structure, remain poorly understood. With the aid of high-resolution TEM imaging as well as TEM tomography we examine the effect of Si3N4 material properties on the nanopore structure. In particular, we study the dependence of membrane thickness on the nanopore contraction rate for different initial pore sizes. We explain nanopore formation kinetics as a balance of two opposite processes: ( a) material sputtering and ( b) surface-tension-induced shrinking.
引用
收藏
页数:5
相关论文
共 24 条
  • [1] Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    Akeson, M
    Branton, D
    Kasianowicz, JJ
    Brandin, E
    Deamer, DW
    [J]. BIOPHYSICAL JOURNAL, 1999, 77 (06) : 3227 - 3233
  • [2] Dynamics of DNA molecules in a membrane channel probed by active control techniques
    Bates, M
    Burns, M
    Meller, A
    [J]. BIOPHYSICAL JOURNAL, 2003, 84 (04) : 2366 - 2372
  • [3] Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores
    Chen, P
    Mitsui, T
    Farmer, DB
    Golovchenko, J
    Gordon, RG
    Branton, D
    [J]. NANO LETTERS, 2004, 4 (07) : 1333 - 1337
  • [4] Sizing DNA using a nanometer-diameter pore
    Heng, JB
    Ho, C
    Kim, T
    Timp, R
    Aksimentiev, A
    Grinkova, YV
    Sligar, S
    Schulten, K
    Timp, G
    [J]. BIOPHYSICAL JOURNAL, 2004, 87 (04) : 2905 - 2911
  • [5] Single-molecule analysis of DNA-protein complexes using nanopores
    Hornblower, Breton
    Coombs, Amy
    Whitaker, Richard D.
    Kolomeisky, Anatoly
    Picone, Stephen J.
    Meller, Amit
    Akeson, Mark
    [J]. NATURE METHODS, 2007, 4 (04) : 315 - 317
  • [6] Characterization of individual polynucleotide molecules using a membrane channel
    Kasianowicz, JJ
    Brandin, E
    Branton, D
    Deamer, DW
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (24) : 13770 - 13773
  • [7] Rapid fabrication of uniformly sized nanopores and nanopore arrays for parallel DNA analysis
    Kim, Min Jun
    Wanunu, Meni
    Bell, David C.
    Meller, Amit
    [J]. ADVANCED MATERIALS, 2006, 18 (23) : 3149 - +
  • [8] Fabrication and characterization of nanopore-based electrodes with radii down to 2 nm
    Krapf, D
    Wu, MY
    Smeets, RMM
    Zandbergen, HW
    Dekker, C
    Lemay, SG
    [J]. NANO LETTERS, 2006, 6 (01) : 105 - 109
  • [9] Computer visualization of three-dimensional image data using IMOD
    Kremer, JR
    Mastronarde, DN
    McIntosh, JR
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) : 71 - 76
  • [10] Ion-beam sculpting at nanometre length scales
    Li, J
    Stein, D
    McMullan, C
    Branton, D
    Aziz, MJ
    Golovchenko, JA
    [J]. NATURE, 2001, 412 (6843) : 166 - 169