Differential stabilization of adenine quartets by anions and cations

被引:18
|
作者
van der Wijst, Tushar [1 ]
Lippert, Bernhard [1 ]
Swart, Marcel [3 ,4 ]
Guerra, Celia Fonseca [2 ]
Bickelhaupt, F. Matthias [2 ]
机构
[1] Tech Univ Dortmund, Fak Chem, D-44221 Dortmund, Germany
[2] Vrije Univ Amsterdam, Scheikundig Lab, Amsterdam Ctr Multiscale Modeling, Dept Theoret Chem, NL-1081 HV Amsterdam, Netherlands
[3] Catalan Inst Res & Adv Studies ICREA, Barcelona 08010, Catalonia, Spain
[4] Univ Girona, Inst Quim Computac, Girona 17071, Catalonia, Spain
来源
关键词
Adenine quartets; Anion binding; Cation binding; Density functional calculations; Solvent effects; DENSITY-FUNCTIONAL THEORY; CRYSTAL-STRUCTURE; SCREENING MODEL; DNA QUADRUPLEX; RNA TETRAPLEX; ENERGY; SOLVATION; TETRADS; IONS; STABILITY;
D O I
10.1007/s00775-009-0611-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have investigated the structures and stabilities of four different adenine quartets with alkali and halide ions in the gas phase and in water, using dispersion-corrected density functional theory at the BLYP-D/TZ2P level. First, we examine the empty quartets and how they interact with alkali cations and halide anions with formation of adenine quartet-ion complexes. Second, we examine the interaction in a stack, in which a planar adenine quartet interacts with a cation or anion in the periphery as well as in the center of the quartet. Interestingly, for the latter situation, we find that both cations and anions can stabilize a planar adenine quartet in a stack.
引用
收藏
页码:387 / 397
页数:11
相关论文
共 50 条
  • [1] Differential stabilization of adenine quartets by anions and cations
    Tushar van der Wijst
    Bernhard Lippert
    Marcel Swart
    Célia Fonseca Guerra
    F. Matthias Bickelhaupt
    JBIC Journal of Biological Inorganic Chemistry, 2010, 15 : 387 - 397
  • [2] ELECTRIC-FIELD MAPPING OF SOME ANIONS AND CATIONS OF ADENINE AND GUANINE
    MOHAN, CG
    KUMAR, A
    MISHRA, PC
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1993, 48 (04) : 233 - 238
  • [3] Mixed guanine, adenine base quartets: possible roles of protons and metal ions in their stabilization
    Dominik A. Megger
    Patrick M. Lax
    Jeroen Paauwe
    Célia Fonseca Guerra
    Bernhard Lippert
    JBIC Journal of Biological Inorganic Chemistry, 2018, 23 : 41 - 49
  • [4] Mixed guanine, adenine base quartets: possible roles of protons and metal ions in their stabilization
    Megger, Dominik A.
    Lax, Patrick M.
    Paauwe, Jeroen
    Guerra, Celia Fonseca
    Lippert, Bernhard
    JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2018, 23 (01): : 41 - 49
  • [5] Relative role of anions and cations in the stabilization of halophilic malate dehydrogenase
    Ebel, C
    Faou, P
    Kernel, B
    Zaccai, G
    BIOCHEMISTRY, 1999, 38 (28) : 9039 - 9047
  • [6] STABILIZATION OF UNUSUAL CATIONS BY VERY WEAKLY BASIC FLUORO ANIONS
    AUBKE, A
    INORGANIC FLUORINE CHEMISTRY: TOWARD THE 21ST CENTURY, 1994, 555 : 350 - 365
  • [7] THE STABILIZATION OF UNUSUAL CATIONS BY VERY WEAKLY BASIC FLUORO-ANIONS
    AUBKE, F
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1992, 203 : 49 - FLUO
  • [8] ANTIDIFFUSION ASPECTS OF DIFFERENTIAL CURRENT OF CATIONS AND ANIONS IN ELECTROLYTE-SOLUTIONS
    TROSHIN, VP
    SOVIET ELECTROCHEMISTRY, 1977, 13 (04): : 521 - 521
  • [9] Inorganic anions and cations
    Haddad, PR
    ELECTROPHORESIS, 2003, 24 (12-13) : 1881 - 1881
  • [10] ANIONS VERSUS CATIONS
    CHRISTENSEN, HN
    AMERICAN JOURNAL OF MEDICINE, 1957, 23 (02): : 163 - 165