Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants

被引:66
作者
Julca, Irene [1 ]
Ferrari, Camilla [2 ]
Flores-Tornero, Maria [3 ]
Proost, Sebastian [2 ,4 ,5 ]
Lindner, Ann-Cathrin [6 ]
Hackenberg, Dieter [7 ,8 ]
Steinbachova, Lenka [9 ]
Michaelidis, Christos [9 ]
Pereira, Sonia Gomes [6 ]
Misra, Chandra Shekhar [6 ,10 ]
Kawashima, Tomokazu [11 ,12 ]
Borg, Michael [11 ]
Berger, Frederic [11 ]
Goldberg, Jacob [13 ]
Johnson, Mark [13 ]
Honys, David [9 ]
Twell, David [7 ]
Sprunck, Stefanie [3 ]
Dresselhaus, Thomas [3 ]
Becker, Joerg D. [6 ,10 ]
Mutwil, Marek [1 ]
机构
[1] Nanyang Technol Univ, Sch Biol Sci, Singapore, Singapore
[2] Max Planck Inst Mol Plant Physiol, Potsdam, Germany
[3] Univ Regensburg, Cell Biol & Plant Biochem, Regensburg, Germany
[4] Katholieke Univ Leuven, Dept Microbiol & Immunol, Lab Mol Bacteriol, Rega Inst, Leuven, Belgium
[5] Ctr Microbiol, VIB, Leuven, Belgium
[6] Inst Gulbenkian Ciencias, Oeiras, Portugal
[7] Univ Leicester, Dept Genet & Genome Biol, Leicester, Leics, England
[8] Univ Warwick, Sch Life Sci, Gibbet Hill Campus, Coventry, W Midlands, England
[9] Czech Acad Sci, Lab Pollen Biol, Inst Expt Bot, Prague, Czech Republic
[10] Univ Nova Lisboa, Inst Tecnol Quim & Biol, Oeiras, Portugal
[11] Austrian Acad Sci, BioCtr VBC, Gregor Mendel Inst GMI, Vienna, Austria
[12] Univ Kentucky, Dept Plant & Soil Sci, Lexington, KY USA
[13] Brown Univ, Dept Mol Biol Cell Biol & Biochem Brown, Providence, RI USA
基金
英国生物技术与生命科学研究理事会; 美国国家科学基金会; 奥地利科学基金会;
关键词
GENE FAMILY; ARABIDOPSIS-THALIANA; YOUNG GENES; EVOLUTION; ORIGIN; DIVISION; GENOME; GROWTH; ROOTS;
D O I
10.1038/s41477-021-00958-2
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
A large-scale comparison of transcriptome datasets from ten evolutionarily representative species identifies general patterns on the genomic evolution of various plant organs. Among various insights, the authors find that the origin of organ-specific gene families predate the origin of the organs themselves. The appearance of plant organs mediated the explosive radiation of land plants, which shaped the biosphere and allowed the establishment of terrestrial animal life. The evolution of organs and immobile gametes required the coordinated acquisition of novel gene functions, the co-option of existing genes and the development of novel regulatory programmes. However, no large-scale analyses of genomic and transcriptomic data have been performed for land plants. To remedy this, we generated gene expression atlases for various organs and gametes of ten plant species comprising bryophytes, vascular plants, gymnosperms and flowering plants. A comparative analysis of the atlases identified hundreds of organ- and gamete-specific orthogroups and revealed that most of the specific transcriptomes are significantly conserved. Interestingly, our results suggest that co-option of existing genes is the main mechanism for evolving new organs. In contrast to female gametes, male gametes showed a high number and conservation of specific genes, which indicates that male reproduction is highly specialized. The expression atlas capturing pollen development revealed numerous transcription factors and kinases essential for pollen biogenesis and function.
引用
收藏
页码:1143 / +
页数:19
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