Use of Density Functional Theory calculations in the development of a novel mechanism for proton pumping by the B-type cytochrome c oxidases:: The cytochrome ba3 from Thermus thermophilus

被引:0
|
作者
Fee, James A. [1 ]
Case, David A. [1 ]
Noodleman, Louis [1 ]
机构
[1] Scripps Res Inst, La Jolla, CA 92037 USA
来源
FASEB JOURNAL | 2007年 / 21卷 / 06期
关键词
D O I
暂无
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:A1011 / A1011
页数:1
相关论文
共 36 条
  • [21] The Reactions of O2 and NO with Mixed-Valence ba3 Cytochrome c Oxidase from Thermus thermophilus
    Szundi, Istvan
    Funatogawa, Chie
    Soulimane, Tewfik
    Einarsdottir, Olof
    BIOPHYSICAL JOURNAL, 2020, 118 (02) : 386 - 395
  • [22] New insights into the proton pumping mechanism of ba3 cytochrome c oxidase: the functions of key residues and water
    Yang, Xiaoyue
    Liu, Shaohui
    Yin, Zhili
    Chen, Mengguo
    Song, Jinshuai
    Li, Pengfei
    Yang, Longhua
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2023, 25 (37) : 25105 - 25115
  • [23] Water exit pathways and proton pumping mechanism in B-type cytochrome c oxidase from molecular dynamics simulations
    Yang, Longhua
    Skjevik, Age A.
    Du, Wen-Ge Han
    Noodleman, Louis
    Walker, Ross C.
    Gotz, Andreas W.
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2016, 1857 (09): : 1594 - 1606
  • [24] Density Functional Study for the Bridged Dinuclear Center Based on a High-Resolution X-ray Crystal Structure of ba3 Cytochrome c Oxidase from Thermus thermophilus
    Du, Wen-Ge Han
    Noodleman, Louis
    INORGANIC CHEMISTRY, 2013, 52 (24) : 14072 - 14088
  • [25] Fourier transform infrared characterization of a CuB-Nitrosyl complex in cytochrome ba3 from Thermus thermophilus:: Relevance to NO reductase activity in heme-copper terminal oxidases
    Hayashi, Takahiro
    Lin, I-Jin
    Chen, Ying
    Fee, James A.
    Moenne-Loccoz, Pierre
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (48) : 14952 - 14958
  • [26] Reaction pathways, proton transfer, and proton pumping in ba3 class cytochrome c oxidase: perspectives from DFT quantum chemistry and molecular dynamics
    Noodleman, Louis
    Gotz, Andreas W.
    Du, Wen-Ge Han
    Hunsicker-Wang, Laura
    FRONTIERS IN CHEMISTRY, 2023, 11
  • [27] A broken-symmetry density functional study of structures, energies, and protonation states along the catalytic O-O bond cleavage pathway in ba3 cytochrome c oxidase from Thermus thermophilus
    Du, Wen-Ge Han
    Gotz, Andreas W.
    Yang, Longhua
    Walker, Ross C.
    Noodleman, Louis
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (31) : 21162 - 21171
  • [28] Pulse Radiolysis Studies of Temperature Dependent Electron Transfers among Redox Centers in ba3-Cytochrome c Oxidase from Thermus thermophilus: Comparison of A- and B-Type Enzymes
    Farver, Ole
    Wherland, Scot
    Antholine, William E.
    Gemmen, Gregory J.
    Chen, Ying
    Pecht, Israel
    Fee, James A.
    BIOCHEMISTRY, 2010, : 2506 - 2521
  • [29] Phylogenetic and biochemical studies of Thermus thermophilus respiratory proteins relevant to aerobic heterotrophy at hydrothermal vents:: the archaeal-type cytochrome ba3 from strain HB8 is a sulphide resistant cytochrome c oxidase
    Fee, JA
    Todaro, TR
    Sanders, D
    CAHIERS DE BIOLOGIE MARINE, 1998, 39 (3-4): : 351 - 354
  • [30] Broken Symmetry DFT Calculations/Analysis for Oxidized and Reduced Dinuclear Center in Cytochrome c Oxidase: Relating Structures, Protonation States, Energies, and Mossbauer Properties in ba3 Thermus thermophilus
    Du, Wen-Ge Han
    Noodleman, Louis
    INORGANIC CHEMISTRY, 2015, 54 (15) : 7272 - 7290