Sphingomonas panacisoli sp. nov., bacterium isolated from soil in South Korea

被引:2
作者
Maeng, Soohyun [1 ]
Liu, Qingzhen [2 ,3 ,4 ]
Park, Yuna [1 ]
Bai, Jaewoo [5 ]
Im, Wan-Taek [2 ,3 ,4 ]
机构
[1] Seoul Womens Univ, Coll Nat Sci, Dept Bio & Environm Technol, Seoul 139774, South Korea
[2] Hankyoung Natl Univ, Dept Biotechnol, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[3] Hankyoung Natl Univ, HK Ginseng Res Ctr, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[4] AceEMzyme Co Ltd, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[5] Seoul Womens Univ, Div Appl Food Syst, Major Food Sci & Technol, Seoul 01797, South Korea
关键词
Proteobacteria; Soil bacteria; Sphingomonas; Sphingomonadaceae;
D O I
10.1099/ijsem.0.004675
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A newly isolated bacterial strain designated as HKS19 was isolated from a ginseng cultivation soil sample collected in South Korea. Cells of the strain HKS19 were Gram-stain-negative, rod, oval-shaped and they formed yellow colonies when grown on R2A agar at 30 degrees C. HKS19 showed the highest 16S rRNA gene sequence similarity (98.6%) with Sphingomonas asaccharolytica NBRC 15499(T). Its growth was observed at 10-37 degrees C (optimum 30 degrees C), pH 6-9 (optimum pH 7), and in the presence of 0-1% NaCl (optimum 0%). The genome size of HKS19 was 3.4 Mb and the G+C content was 65.1 mol%. The main polar lipid of strain HKS19 was diphosphatidylglycerol (DPG), the predominant respiratory quinone was Q-10 and the major fatty acids were a summed feature 8 (C-18:1 omega 6c / C-18:1 omega 7c) and C-16:0. Based on the phylogenetic, genotypic, phenotypic and chemotaxonomic analysis, strain HKS19 represents a newly isolated species of the genus Sphingomonas, for which the name Sphingomonas panacisoli is proposed. The type strain is HKS19(T) (=KACC 18881(T)=LMG 29564(T)).
引用
收藏
页数:6
相关论文
共 26 条
[1]  
Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]
[2]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[3]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[4]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[5]   Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection [J].
Hiraishi, A ;
Ueda, Y ;
Ishihara, J ;
Mori, T .
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 1996, 42 (06) :457-469
[6]   PSEUDOMONAS-PAUCIMOBILIS, A NEW SPECIES ISOLATED FROM HUMAN CLINICAL SPECIMENS, HOSPITAL ENVIRONMENT, AND OTHER SOURCES [J].
HOLMES, B ;
OWEN, RJ ;
EVANS, A ;
MALNICK, H ;
WILLCOX, WR .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1977, 27 (02) :133-146
[7]   EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes [J].
Jeon, Yoon-Seong ;
Lee, Kihyun ;
Park, Sang-Cheol ;
Kim, Bong-Soo ;
Cho, Yong-Joon ;
Ha, Sung-Min ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :689-691
[8]   Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes [J].
Kim, Mincheol ;
Oh, Hyun-Seok ;
Park, Sang-Cheol ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :346-351
[10]  
KOMAGATA K, 1987, METHOD MICROBIOL, V19, P161