Alternative splicing: a bioinformatics perspective

被引:5
|
作者
Ferreira, Elisa Napolitano
Galante, Pedro A. F.
Carraro, Dirce Maria
de Souza, Sandro Jose [1 ]
机构
[1] Hosp AC Camargo Fund Antonio Prudente, Sao Paulo Branch, Ludwig Inst Canc Res, Sao Paulo, Brazil
[2] Hosp Alemao Oswaldo Cruz, Ludwig Inst Canc Res, Sao Paulo, Brazil
关键词
D O I
10.1039/b702485c
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The degree of diversity at the transcriptome and proteome levels generated by alternative splicing is astonishing. In this review, we discuss several issues related to alternative splicing with a special emphasis on identification strategies based on bioinformatics.
引用
收藏
页码:473 / 477
页数:5
相关论文
共 50 条
  • [1] Bioinformatics analysis of alternative splicing
    Lee, C
    Wang, Q
    BRIEFINGS IN BIOINFORMATICS, 2005, 6 (01) : 23 - 33
  • [2] ASD: a bioinformatics resource on alternative splicing
    Stamm, Stefan
    Riethoven, Jean-Jack
    Le Texier, Vincent
    Gopalakrishnan, Chellappa
    Kumanduri, Vasudev
    Tang, Yesheng
    Barbosa-Morais, Nuno L.
    Thanaraj, Thangavel Alphonse
    NUCLEIC ACIDS RESEARCH, 2006, 34 : D46 - D55
  • [3] Bioinformatics analysis of alternative splicing in fungi
    Linde, J.
    Sieber, P.
    MYCOSES, 2015, 58 : 44 - 44
  • [4] Bioinformatics of alternative splicing and its regulation
    Florea, Liliana
    BRIEFINGS IN BIOINFORMATICS, 2006, 7 (01) : 55 - 69
  • [5] Analysis of Alternative Splicing in Plants with Bioinformatics Tools
    Haas, B. J.
    NUCLEAR PRE-MRNA PROCESSING IN PLANTS, 2008, 326 : 17 - 37
  • [6] BIPASS: BioInformatics Pipeline Alternative Splicing Services
    Lacroix, Zoe
    Legendre, Christophe
    Raschid, Louiqa
    Snyder, Ben
    NUCLEIC ACIDS RESEARCH, 2007, 35 : W292 - W296
  • [7] A Bioinformatics Approach to Uncovering the Role of Alternative Splicing in Plants
    Nyung, J. L.
    Everson, C. N.
    Roy, S. W.
    INTEGRATIVE AND COMPARATIVE BIOLOGY, 2018, 58 : E389 - E389
  • [8] Perspective on Alternative Splicing and Proteome Complexity in Plants
    Chaudhary, Saurabh
    Jabre, Ibtissam
    Reddy, Anireddy S. N.
    Staiger, Dorothee
    Syed, Naeem H.
    TRENDS IN PLANT SCIENCE, 2019, 24 (06) : 496 - 506
  • [9] Integrative bioinformatics analysis of prognostic alternative splicing signatures in gastric cancer
    Zong, Zhen
    Li, Hui
    Ning, Zhikun
    Hu, Cegui
    Tang, Fuxin
    Zhu, Xiaojian
    Tian, Huakai
    Zhou, Taicheng
    Wang, He
    JOURNAL OF GASTROINTESTINAL ONCOLOGY, 2020, 11 (04) : 685 - 694
  • [10] Bioinformatics analysis of the prognostic role of alternative splicing data in lung adenocarcinoma
    Zhao, Lingling
    He, Shuting
    Liu, Ziwei
    Song, Zhibin
    Hou, Xiaochun
    Gai, Ling
    JOURNAL OF THORACIC DISEASE, 2024, 16 (02) : 1463 - 1472