Thermostability engineering of industrial enzymes through structure modification

被引:69
作者
Nezhad, Nima Ghahremani [1 ,2 ]
Abd Rahman, Raja Noor Zaliha Raja [1 ,3 ]
Normi, Yahaya M. [1 ,2 ]
Oslan, Siti Nurbaya [1 ,4 ]
Shariff, Fairolniza Mohd [1 ,3 ]
Leow, Thean Chor [1 ,2 ,5 ]
机构
[1] Univ Putra Malaysia, Fac Biotechnol & Biomol Sci, Enzyme & Microbial Res Ctr, Serdang 43400, Selangor, Malaysia
[2] Univ Putra Malaysia, Fac Biotechnol & Biomol Sci, Dept Cell & Mol Biol, Serdang 43400, Selangor, Malaysia
[3] Univ Putra Malaysia, Fac Biotechnol & Biomol Sci, Dept Microbiol, Serdang 43400, Selangor, Malaysia
[4] Univ Putra Malaysia, Fac Biotechnol & Biomol Sci, Dept Biochem, Serdang 43400, Selangor, Malaysia
[5] Univ Putra Malaysia, Inst Biosci, Serdang 43400, Selangor, Malaysia
关键词
Single mutants; Thermostability; Industrial enzymes; Rational design; Semi-rational design; SITE-DIRECTED MUTAGENESIS; ITERATIVE SATURATION MUTAGENESIS; AMINO-ACID SUBSTITUTIONS; PROTEIN STABILITY; THERMAL-STABILITY; RATIONAL DESIGN; FREE-ENERGY; PROLINE SUBSTITUTIONS; ANGSTROM RESOLUTION; CRYSTAL-STRUCTURE;
D O I
10.1007/s00253-022-12067-x
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Thermostability is an essential requirement of enzymes in the industrial processes to catalyze the reactions at high temperatures; thus, enzyme engineering through directed evolution, semi-rational design and rational design are commonly employed to construct desired thermostable mutants. Several strategies are implemented to fulfill enzymes' thermostability demand including decreasing the entropy of the unfolded state through substitutions Gly -> Xxx or Xxx -> Pro, hydrogen bond, salt bridge, introducing two different simultaneous interactions through single mutant, hydrophobic interaction, filling the hydrophobic cavity core, decreasing surface hydrophobicity, truncating loop, aromatic-aromatic interaction and introducing positively charged residues to enzyme surface. In the current review, horizons about compatibility between secondary structures and substitutions at preferable structural positions to generate the most desirable thermostability in industrial enzymes are broadened. Key points Protein engineering is a powerful tool for generating thermostable industrial enzymes. Directed evolution and rational design are practical approaches in enzyme engineering. Substitutions in preferable structural positions can increase thermostability.
引用
收藏
页码:4845 / 4866
页数:22
相关论文
共 175 条
[1]   Conformational stabilities of Escherichia coli RNase HI variants with a series of amino acid substitutions at a cavity within the hydrophobic core [J].
Akasako, A ;
Haruki, M ;
Oobatake, M ;
Kanaya, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (30) :18686-18693
[2]   The effective role of positive charge saturation in bioluminescence color and thermostability of firefly luciferase [J].
Alipour, Bagher Said ;
Hosseinkhani, Saman ;
Ardestani, Sussan K. ;
Moradi, Ali .
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES, 2009, 8 (06) :847-855
[3]   Thermostabilization of Bacillus subtilis GH11 xylanase by surface charge engineering [J].
Alponti, Juliana Sanchez ;
Maldonado, Raquel Fonseca ;
Ward, Richard J. .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2016, 87 :522-528
[4]   Improved Thermostability of Clostridium thermocellum Endoglucanase Cel8A by Using Consensus-Guided Mutagenesis [J].
Anbar, Michael ;
Gul, Ozgur ;
Lamed, Raphael ;
Sezerman, Ugur O. ;
Bayer, Edward A. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2012, 78 (09) :3458-3464
[5]   Engineering of serine protease for improved thermostability and catalytic activity using rational design [J].
Ashraf, Naeem Mahmood ;
Krishnagopal, Akshaya ;
Hussain, Aadil ;
Kastner, David ;
Sayed, Ahmed Mahmoud Mohammed ;
Mok, Yu-Keung ;
Swaminathan, Kunchithapadam ;
Zeeshan, Nadia .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2019, 126 :229-237
[6]   Improved thermostability of creatinase from Alcaligenes Faecalis through non-biased phylogenetic consensus-guided mutagenesis [J].
Bai, Xue ;
Li, Daixi ;
Ma, Fuqiang ;
Deng, Xi ;
Luo, Manjie ;
Feng, Yan ;
Yang, Guangyu .
MICROBIAL CELL FACTORIES, 2020, 19 (01)
[7]   How the hydrophobic factor drives protein folding [J].
Baldwin, Robert L. ;
Rose, George D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (44) :12462-12466
[8]   Engineering of Thermal Stability in a Cold-Active Oligo-1,6-Glucosidase from Exiguobacterium sibiricum with Unusual Amino Acid Content [J].
Berlina, Yana Y. ;
Petrovskaya, Lada E. ;
Kryukova, Elena A. ;
Shingarova, Lyudmila N. ;
Gapizov, Sultan Sh ;
Kryukova, Mariya, V ;
Rivkina, Elizaveta M. ;
Kirpichnikov, Mikhail P. ;
Dolgikh, Dmitry A. .
BIOMOLECULES, 2021, 11 (08)
[9]  
Bettache A, 2018, SAJ BIOTECHNOL, V5, P106
[10]   SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information [J].
Biasini, Marco ;
Bienert, Stefan ;
Waterhouse, Andrew ;
Arnold, Konstantin ;
Studer, Gabriel ;
Schmidt, Tobias ;
Kiefer, Florian ;
Cassarino, Tiziano Gallo ;
Bertoni, Martino ;
Bordoli, Lorenza ;
Schwede, Torsten .
NUCLEIC ACIDS RESEARCH, 2014, 42 (W1) :W252-W258