Response of the Anaerobic Methanotrophic Archaeon Candidatus "Methanoperedens nitroreducens" to the Long-Term Ferrihydrite Amendment

被引:13
作者
Cai, Chen
Ni, Gaofeng
Xia, Jun
Zhang, Xueqin
Zheng, Yue
He, Bingqing
Marcellin, Esteban
Li, Weiwei
Pu, Jiaoyang
Yuan, Zhiguo
Hu, Shihu
机构
[1] CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei
[2] Australian Centre for Water and Environmental Biotechnology, The University of Queensland, St Lucia, QLD
[3] State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen
[4] Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD
[5] State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing
基金
澳大利亚研究理事会;
关键词
anaerobic oxidation of methane; Fe(III) reduction; ANME archaea; extracellular electron transfer; multiheme c-type cytochromes; methanogen; acetate; METHANE OXIDATION; FRESH-WATER; ELECTRON-TRANSFER; IRON REDUCTION; COENZYME-A; ACETATE; DATABASE; MICROORGANISMS; MECHANISMS; ADSORPTION;
D O I
10.3389/fmicb.2022.799859
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Anaerobic methanotrophic (ANME) archaea can drive anaerobic oxidation of methane (AOM) using solid iron or manganese oxides as the electron acceptors, hypothetically via direct extracellular electron transfer (EET). This study investigated the response of Candidatus "Methanoperedens nitroreducens TS" (type strain), an ANME archaeon previously characterized to perform nitrate-dependent AOM, to an Fe(III)-amended condition over a prolonged period. Simultaneous consumption of methane and production of dissolved Fe(II) were observed for more than 500 days in the presence of Ca. "M. nitroreducens TS," indicating that this archaeon can carry out Fe(III)-dependent AOM for a long period. Ca. "M. nitroreducens TS" possesses multiple multiheme c-type cytochromes (MHCs), suggesting that it may have the capability to reduce Fe(III) via EET. Intriguingly, most of these MHCs are orthologous to those identified in Candidatus "Methanoperedens ferrireducens," an Fe(III)-reducing ANME archaeon. In contrast, the population of Ca. "M. nitroreducens TS" declined and was eventually replaced by Ca. "M. ferrireducens," implying niche differentiation between these two ANME archaea in the environment.
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页数:12
相关论文
共 93 条
[41]   The PROSITE database [J].
Hulo, Nicolas ;
Bairoch, Amos ;
Bulliard, Virginie ;
Cerutti, Lorenzo ;
De Castro, Edouard ;
Langendijk-Genevaux, Petra S. ;
Pagni, Marco ;
Sigrist, Christian J. A. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D227-D230
[42]   The hunt for the most-wanted chemolithoautotrophic spookmicrobes [J].
in 't Zandt, Michiel H. ;
de Jong, Anniek E. E. ;
Slomp, Caroline P. ;
Jetten, Mike S. M. .
FEMS MICROBIOLOGY ECOLOGY, 2018, 94 (06)
[43]   Isolation of Oligotrophic Denitrifiers Carrying Previously Uncharacterized Functional Gene Sequences [J].
Ishii, Satoshi ;
Ashida, Naoaki ;
Otsuka, Shigeto ;
Senoo, Keishi .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (01) :338-342
[44]   High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries [J].
Jain, Chirag ;
Rodriguez-R, Luis M. ;
Phillippy, Adam M. ;
Konstantinidis, Konstantinos T. ;
Aluru, Srinivas .
NATURE COMMUNICATIONS, 2018, 9
[45]   Hidden Markov model speed heuristic and iterative HMM search procedure [J].
Johnson, L. Steven ;
Eddy, Sean R. ;
Portugaly, Elon .
BMC BIOINFORMATICS, 2010, 11
[46]  
JONES JG, 1984, FEMS MICROBIOL LETT, V21, P133, DOI 10.1016/0378-1097(84)90191-5
[47]   KEGG: Kyoto Encyclopedia of Genes and Genomes [J].
Kanehisa, M ;
Goto, S .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :27-30
[48]   Anaerobic Oxidation of Methane: Progress with an Unknown Process [J].
Knittel, Katrin ;
Boetius, Antje .
ANNUAL REVIEW OF MICROBIOLOGY, 2009, 63 :311-334
[49]  
Koonin E.V., 2002, NCBI Handb
[50]   IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].
Lam-Tung Nguyen ;
Schmidt, Heiko A. ;
von Haeseler, Arndt ;
Bui Quang Minh .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274