The complete plastome of Syzygium odoratum (Lour.) DC. 1928 (Myrtaceae)

被引:2
作者
Chen, Li-Da [1 ]
Wang, Hua-Feng [1 ]
Hou, De-Jia [1 ,2 ]
机构
[1] Hainan Univ, Hainan Yazhou Bay Seed Lab, Sanya Nanfan Res Inst, Sanya 572025, Peoples R China
[2] Huazhong Agr Univ, Coll Sci, Wuhan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 04期
基金
海南省自然科学基金;
关键词
Genome structure; plastome; Syzygium; Syzygium odoratum (Lour; ) DC; 1828;
D O I
10.1080/23802359.2022.2067015
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Syzygium odoratum (Lour.) DC. 1828 is a deciduous shrub in the family Myrtaceae. This species grows in sparse forests, especially in mountains, valleys, and broad-leaved evergreen forests along streams from 100 to 400 m above sea level. The primary distribution is in southern China (e.g. Guangdong, Guangxi, Hainan, etc.) and other south Asian countries (e.g. Vietnam). Here, we report and characterize the complete plastome from a cultivar of S. odoratum (Lour.) DC. 1828. The complete plastome is 159,352 bp in length with a typical structure and gene content found in angiosperms, including two inverted repeat regions (IRs) of 26,472 bp, a large single-copy (LSC) region of 87,993 bp, and a small single-copy (SSC) region of 18,415 bp. The plastome contains 132 genes, consisting of 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall G/C content in the plastome of S. odoratum is 36.9%. By inferring phylogenetic relationships based on the existing data of related taxa, we find that S. odoratum is most closely related to Syzygium acuminatissimum, (Blume) DC. 1828 given the current sampling. The complete plastome sequence of S. odoratum will provide a useful resource for conservation genetics of this species, as well as for phylogenetic studies involving Myrtaceae.
引用
收藏
页码:705 / 706
页数:2
相关论文
共 6 条
[1]  
Chen J, 1984, FLORA CHINA, V53, P94
[2]   THE RETENTION INDEX AND HOMOPLASY EXCESS [J].
FARRIS, JS .
SYSTEMATIC ZOOLOGY, 1989, 38 (04) :406-407
[3]   Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].
Hahn, Christoph ;
Bachmann, Lutz ;
Chevreux, Bastien .
NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129
[4]   RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [J].
Stamatakis, Alexandros .
BIOINFORMATICS, 2006, 22 (21) :2688-2690
[5]   Automatic annotation of organellar genomes with DOGMA [J].
Wyman, SK ;
Jansen, RK ;
Boore, JL .
BIOINFORMATICS, 2004, 20 (17) :3252-3255
[6]   Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered "Vulnerable" in Southeast Asia [J].
Zhu, Zhi-Xin ;
Mu, Wei-Xue ;
Wang, Jian-Hua ;
Zhang, Jin-Ran ;
Zhao, Kun-Kun ;
Friedman, Cynthia Ross ;
Wang, Hua-Feng .
MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02) :620-621