Computational Morphodynamics: A Modeling Framework to Understand Plant Growth

被引:62
作者
Chickarmane, Vijay [1 ]
Roeder, Adrienne H. K. [1 ,3 ]
Tarr, Paul T. [1 ]
Cunha, Alexandre [2 ,3 ]
Tobin, Cory [1 ]
Meyerowitz, Elliot M. [1 ]
机构
[1] CALTECH, Div Biol, Pasadena, CA 91125 USA
[2] CALTECH, Ctr Adv Comp Res, Pasadena, CA 91125 USA
[3] CALTECH, Ctr Integrat Study Cell Regulat, Pasadena, CA 91125 USA
来源
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 | 2010年 / 61卷
基金
美国国家科学基金会;
关键词
live imaging; image processing; finite element modeling; simulation; gene regulatory network; cell signaling; GENE-EXPRESSION; AUXIN TRANSPORT; PATTERN-FORMATION; ARABIDOPSIS ROOT; SHOOT APEX; POLAR TRANSPORT; CELL DIVISIONS; DE-NOVO; LEAF; SYSTEMS;
D O I
10.1146/annurev-arplant-042809-112213
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Computational morphodynamics utilizes computer modeling to understand the development of living organisms over space and time. Results from biological experiments are used to construct accurate and predictive models of growth. These models are then used to make novel predictions that provide further insight into the processes involved, which can be tested experimentally to either confirm or rule out the validity of the computational models. This review highlights two fundamental challenges: (a) to understand the feedback between mechanics of growth and chemical or molecular signaling, and (b) to design models that span and integrate single cell behavior with tissue development. We review different approaches to model plant growth and discuss a variety of model types that can be implemented to demonstrate how the interplay between computational modeling and experimentation can be used to explore the morphodynamics of plant development.
引用
收藏
页码:65 / 87
页数:23
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