Cancer epigenetics: Moving forward

被引:356
作者
Nebbioso, Angela [1 ]
Tambaro, Francesco Paolo [2 ]
Dell'Aversana, Carmela [1 ]
Altucci, Lucia [1 ]
机构
[1] Univ Campania L Vanvitelli, Dipartimento Med Precis, Naples, Italy
[2] Azienda Ospedialiera Rilievo Nazl, Trapianto Midollo Osseo, Struttura Semplice Dipartimentale, Naples, Italy
来源
PLOS GENETICS | 2018年 / 14卷 / 06期
关键词
MALIGNANT RHABDOID TUMORS; BREAST-CANCER; GENE-EXPRESSION; GRANULOCYTIC DIFFERENTIATION; PROGESTERONE-RECEPTOR; PREDICTS SENSITIVITY; IMMUNE CHECKPOINTS; DNA METHYLOME; CELL IDENTITY; METHYLATION;
D O I
10.1371/journal.pgen.1007362
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Defects in chromatin modifiers and remodelers have been described both for hematological and solid malignancies, corroborating and strengthening the role of epigenetic aberrations in the etiology of cancer. Furthermore, epigenetic marks-DNA methylation, histone modifications, chromatin remodeling, and microRNA-can be considered potential markers of cancer development and progression. Here, we review whether altered epigenetic landscapes are merely a consequence of chromatin modifier/remodeler aberrations or a hallmark of cancer etiology. We critically evaluate current knowledge on causal epigenetic aberrations and examine to what extent the prioritization of (epi) genetic deregulations can be assessed in cancer as some type of genetic lesion characterizing solid cancer progression. We also discuss the multiple challenges in developing compounds targeting epigenetic enzymes (named epidrugs) for epigenetic-based therapies. The implementation of acquired knowledge of epigenetic biomarkers for patient stratification, together with the development of next-generation epidrugs and predictive models, will take our understanding and use of cancer epigenetics in diagnosis, prognosis, and treatment of cancer patients to a new level.
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页数:25
相关论文
共 146 条
  • [51] H3K4 acetylation, H3K9 acetylation and H3K27 methylation in breast tumor molecular subtypes
    Judes, Gaelle
    Dagdemir, Aslihan
    Karsli-Ceppioglu, Seher
    Lebert, Andre
    Echegut, Maureen
    Ngollo, Marjolaine
    Bignon, Yves-Jean
    Penault-Llorca, Frederique
    Bernard-Gallon, Dominique
    [J]. EPIGENOMICS, 2016, 8 (07) : 909 - 924
  • [52] Global methylation analysis identifies prognostically important epigenetically inactivated tumor suppressor genes in multiple myeloma
    Kaiser, Martin F.
    Johnson, David C.
    Wu, Ping
    Walker, Brian A.
    Brioli, Annamaria
    Mirabella, Fabio
    Wardell, Christopher P.
    Melchor, Lorenzo
    Davies, Faith E.
    Morgan, Gareth J.
    [J]. BLOOD, 2013, 122 (02) : 219 - 226
  • [53] The Epigenetic Landscape of Promoter Genome-wide Analysis in Breast Cancer
    Karsli-Ceppioglu, Seher
    Dagdemir, Aslihan
    Judes, Gaelle
    Lebert, Andre
    Penault-Llorca, Frederique
    Bignon, Yves-Jean
    Bernard-Gallon, Dominique
    [J]. SCIENTIFIC REPORTS, 2017, 7
  • [54] Absence of oncogenic canonical pathway mutations in aggressive pediatric rhabdoid tumors
    Kieran, Mark W.
    Roberts, Charles W. M.
    Chi, Susan N.
    Ligon, Keith L.
    Rich, Benjamin E.
    MacConaill, Laura E.
    Garraway, Levi A.
    Biegel, Jaclyn A.
    [J]. PEDIATRIC BLOOD & CANCER, 2012, 59 (07) : 1155 - 1157
  • [55] Synergistic Anti-Tumor Activity of EZH2 Inhibitors and Glucocorticoid Receptor Agonists in Models of Germinal Center Non-Hodgkin Lymphomas
    Knutson, Sarah K.
    Warholic, Natalie M.
    Johnston, L. Danielle
    Klaus, Christine R.
    Wigle, Tim J.
    Iwanowicz, Dorothy
    Littlefield, Bruce A.
    Porter-Scott, Margaret
    Smith, Jesse J.
    Moyer, Mikel P.
    Copeland, Robert A.
    Pollock, Roy M.
    Kuntz, Kevin W.
    Raimondi, Alejandra
    Keilhack, Heike
    [J]. PLOS ONE, 2014, 9 (12):
  • [56] Durable tumor regression in genetically altered malignant rhabdoid tumors by inhibition of methyltransferase EZH2
    Knutson, Sarah K.
    Warholic, Natalie M.
    Wigle, Tim J.
    Klaus, Christine R.
    Allain, Christina J.
    Raimondi, Alejandra
    Scott, Margaret Porter
    Chesworth, Richard
    Moyer, Mikel P.
    Copeland, Robert A.
    Richon, Victoria M.
    Pollock, Roy M.
    Kuntz, Kevin W.
    Keilhack, Heike
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (19) : 7922 - 7927
  • [57] Comprehensive molecular portraits of human breast tumours
    Koboldt, Daniel C.
    Fulton, Robert S.
    McLellan, Michael D.
    Schmidt, Heather
    Kalicki-Veizer, Joelle
    McMichael, Joshua F.
    Fulton, Lucinda L.
    Dooling, David J.
    Ding, Li
    Mardis, Elaine R.
    Wilson, Richard K.
    Ally, Adrian
    Balasundaram, Miruna
    Butterfield, Yaron S. N.
    Carlsen, Rebecca
    Carter, Candace
    Chu, Andy
    Chuah, Eric
    Chun, Hye-Jung E.
    Coope, Robin J. N.
    Dhalla, Noreen
    Guin, Ranabir
    Hirst, Carrie
    Hirst, Martin
    Holt, Robert A.
    Lee, Darlene
    Li, Haiyan I.
    Mayo, Michael
    Moore, Richard A.
    Mungall, Andrew J.
    Pleasance, Erin
    Robertson, A. Gordon
    Schein, Jacqueline E.
    Shafiei, Arash
    Sipahimalani, Payal
    Slobodan, Jared R.
    Stoll, Dominik
    Tam, Angela
    Thiessen, Nina
    Varhol, Richard J.
    Wye, Natasja
    Zeng, Thomas
    Zhao, Yongjun
    Birol, Inanc
    Jones, Steven J. M.
    Marra, Marco A.
    Cherniack, Andrew D.
    Saksena, Gordon
    Onofrio, Robert C.
    Pho, Nam H.
    [J]. NATURE, 2012, 490 (7418) : 61 - 70
  • [58] The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
    Kriaucionis, Skirmantas
    Heintz, Nathaniel
    [J]. SCIENCE, 2009, 324 (5929) : 929 - 930
  • [59] Whole-genome fingerprint of the DNA methylome during human B cell differentiation
    Kulis, Marta
    Merkel, Angelika
    Heath, Simon
    Queiros, Ana C.
    Schuyler, Ronald P.
    Castellano, Giancarlo
    Beekman, Renee
    Raineri, Emanuele
    Esteve, Anna
    Clot, Guillem
    Verdaguer-Dot, Nuria
    Duran-Ferrer, Marti
    Russinol, Nuria
    Vilarrasa-Blasi, Roser
    Ecker, Simone
    Pancaldi, Vera
    Rico, Daniel
    Agueda, Lidia
    Blanc, Julie
    Richardson, David
    Clarke, Laura
    Datta, Avik
    Pascual, Marien
    Agirre, Xabier
    Prosper, Felipe
    Alignani, Diego
    Paiva, Bruno
    Caron, Gersende
    Fest, Thierry
    Muench, Marcus O.
    Fomin, Marina E.
    Lee, Seung-Tae
    Wiemels, Joseph L.
    Valencia, Alfonso
    Gut, Marta
    Flicek, Paul
    Stunnenberg, Hendrik G.
    Siebert, Reiner
    Kueppers, Ralf
    Gut, Ivo G.
    Campo, Elias
    Martin-Subero, Jose I.
    [J]. NATURE GENETICS, 2015, 47 (07) : 746 - +
  • [60] Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
    Kulis, Marta
    Heath, Simon
    Bibikova, Marina
    Queiros, Ana C.
    Navarro, Alba
    Clot, Guillem
    Martinez-Trillos, Alejandra
    Castellano, Giancarlo
    Brun-Heath, Isabelle
    Pinyol, Magda
    Barberan-Soler, Sergio
    Papasaikas, Panagiotis
    Jares, Pedro
    Bea, Silvia
    Rico, Daniel
    Ecker, Simone
    Rubio, Miriam
    Royo, Romina
    Ho, Vincent
    Klotzle, Brandy
    Hernandez, Lluis
    Conde, Laura
    Lopez-Guerra, Monica
    Colomer, Dolors
    Villamor, Neus
    Aymerich, Marta
    Rozman, Maria
    Bayes, Monica
    Gut, Marta
    Gelpi, Josep L.
    Orozco, Modesto
    Fan, Jian-Bing
    Quesada, Victor
    Puente, Xose S.
    Pisano, David G.
    Valencia, Alfonso
    Lopez-Guillermo, Armando
    Gut, Ivo
    Lopez-Otin, Carlos
    Campo, Elias
    Martin-Subero, Jose I.
    [J]. NATURE GENETICS, 2012, 44 (11) : 1236 - 1242