Synthetic biology to access and expand nature's chemical diversity

被引:362
作者
Smanski, Michael J. [1 ,2 ,3 ]
Zhou, Hui [3 ]
Claesen, Jan [4 ]
Shen, Ben [5 ]
Fischbach, Michael A. [4 ]
Voigt, Christopher A. [3 ]
机构
[1] Univ Minnesota Twin Cities, Dept Biochem Mol Biol & Biophys, St Paul, MN 55108 USA
[2] Univ Minnesota Twin Cities, Inst Biotechnol, St Paul, MN 55108 USA
[3] MIT, Dept Biol Engn, Synthet Biol Ctr, 77 Massachusetts Ave, Cambridge, MA 02139 USA
[4] Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
[5] Scripps Res Inst, Dept Chem & Mol Therapeut, Jupiter, FL 33458 USA
关键词
BIOSYNTHETIC GENE-CLUSTER; COMBINATORIAL BIOSYNTHESIS; PEPTIDE SYNTHETASE; DIRECTED EVOLUTION; HETEROLOGOUS HOSTS; ESCHERICHIA-COLI; DESIGN; EXPRESSION; BACTERIAL; PRODUCTS;
D O I
10.1038/nrmicro.2015.24
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of complex molecules with diverse applications, from medicine to agriculture and materials. Accessing these natural products promises to reinvigorate drug discovery pipelines and provide novel routes to synthesize complex chemicals. The pathways leading to the production of these molecules often comprise dozens of genes spanning large areas of the genome and are controlled by complex regulatory networks with some of the most interesting molecules being produced by non-model organisms. In this Review, we discuss how advances in synthetic biology-including novel DNA construction technologies, the use of genetic parts for the precise control of expression and for synthetic regulatory circuits-and multiplexed genome engineering can be used to optimize the design and synthesis of pathways that produce natural products.
引用
收藏
页码:135 / 149
页数:15
相关论文
共 157 条
  • [51] Construction of a genetic toggle switch in Escherichia coli
    Gardner, TS
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2000, 403 (6767) : 339 - 342
  • [52] Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome
    Gibson, Daniel G.
    Glass, John I.
    Lartigue, Carole
    Noskov, Vladimir N.
    Chuang, Ray-Yuan
    Algire, Mikkel A.
    Benders, Gwynedd A.
    Montague, Michael G.
    Ma, Li
    Moodie, Monzia M.
    Merryman, Chuck
    Vashee, Sanjay
    Krishnakumar, Radha
    Assad-Garcia, Nacyra
    Andrews-Pfannkoch, Cynthia
    Denisova, Evgeniya A.
    Young, Lei
    Qi, Zhi-Qing
    Segall-Shapiro, Thomas H.
    Calvey, Christopher H.
    Parmar, Prashanth P.
    Hutchison, Clyde A., III
    Smith, Hamilton O.
    Venter, J. Craig
    [J]. SCIENCE, 2010, 329 (5987) : 52 - 56
  • [53] CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
    Gilbert, Luke A.
    Larson, Matthew H.
    Morsut, Leonardo
    Liu, Zairan
    Brar, Gloria A.
    Torres, Sandra E.
    Stern-Ginossar, Noam
    Brandman, Onn
    Whitehead, Evan H.
    Doudna, Jennifer A.
    Lim, Wendell A.
    Weissman, Jonathan S.
    Qi, Lei S.
    [J]. CELL, 2013, 154 (02) : 442 - 451
  • [54] TIGHT CONTROL OF GENE-EXPRESSION IN MAMMALIAN-CELLS BY TETRACYCLINE-RESPONSIVE PROMOTERS
    GOSSEN, M
    BUJARD, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) : 5547 - 5551
  • [55] Interactions of the QacR multidrug-binding protein with structurally diverse ligands: Implications for the evolution of the binding pocket
    Grkovic, S
    Hardie, KM
    Brown, MH
    Skurray, RA
    [J]. BIOCHEMISTRY, 2003, 42 (51) : 15226 - 15236
  • [56] Codon bias and heterologous protein expression
    Gustafsson, C
    Govindarajan, S
    Minshull, J
    [J]. TRENDS IN BIOTECHNOLOGY, 2004, 22 (07) : 346 - 353
  • [57] A framework and model system to investigate linear system behavior in Escherichia coli
    Hajimorad, Meghdad
    Gray, Paul R.
    Keasling, Jay D.
    [J]. JOURNAL OF BIOLOGICAL ENGINEERING, 2011, 5 (01):
  • [58] Engineered gene circuits
    Hasty, J
    McMillen, D
    Collins, JJ
    [J]. NATURE, 2002, 420 (6912) : 224 - 230
  • [59] One-step high-efficiency CRISPR/Cas9-mediated genome editing in Streptomyces
    Huang, He
    Zheng, Guosong
    Jiang, Weihong
    Hu, Haifeng
    Lu, Yinhua
    [J]. ACTA BIOCHIMICA ET BIOPHYSICA SINICA, 2015, 47 (04) : 231 - 243
  • [60] Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement
    Isaacs, Farren J.
    Carr, Peter A.
    Wang, Harris H.
    Lajoie, Marc J.
    Sterling, Bram
    Kraal, Laurens
    Tolonen, Andrew C.
    Gianoulis, Tara A.
    Goodman, Daniel B.
    Reppas, Nikos B.
    Emig, Christopher J.
    Bang, Duhee
    Hwang, Samuel J.
    Jewett, Michael C.
    Jacobson, Joseph M.
    Church, George M.
    [J]. SCIENCE, 2011, 333 (6040) : 348 - 353