Role of genomics in combating COVID-19 pandemic

被引:32
作者
Saravanan, K. A. [1 ]
Panigrahi, Manjit [1 ]
Kumar, Harshit [1 ]
Rajawat, Divya [1 ]
Nayak, Sonali Sonejita [1 ]
Bhushan, Bharat [1 ]
Dutt, Triveni [2 ]
机构
[1] Indian Vet Res Inst, Div Anim Genet, Bareilly 243122, Uttar Pradesh, India
[2] Indian Vet Res Inst, Livestock Prod & Management Sect, Bareilly 243122, Uttar Pradesh, India
关键词
COVID-19; Genomics; Genomic surveillance; Reverse vaccinology; SARS-CoV-2; SARS-COV-2; GENOMES; VACCINE; RNA; VARIANTS; TOCILIZUMAB; LANDSCAPE; IMPACT; SAFETY;
D O I
10.1016/j.gene.2022.146387
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The coronavirus disease 2019 (COVID-19) quickly swept over the world, becoming one of the most devastating outbreaks in human history. Being the first pandemic in the post-genomic era, advancements in genomics contributed significantly to scientific understanding and public health response to COVID-19. Genomic technologies have been employed by researchers all over the world to better understand the biology of SARS-CoV-2 and its origin, genomic diversity, and evolution. Worldwide genomic resources have greatly aided in the investigation of the COVID-19 pandemic. The pandemic has ushered in a new era of genomic surveillance, wherein scientists are tracking the changes of the SARS-CoV-2 genome in real-time at the international and national levels. Availability of genomic and proteomic information enables the rapid development of molecular diagnostics and therapeutics. The advent of high-throughput sequencing and genome editing technologies led to the development of modern vaccines. We briefly discuss the impact of genomics in the ongoing COVID-19 pandemic in this review.
引用
收藏
页数:11
相关论文
共 131 条
[1]   Development of CRISPR as an Antiviral Strategy to Combat SARS-CoV-2 and Influenza [J].
Abbott, Timothy R. ;
Dhamdhere, Girija ;
Liu, Yanxia ;
Lin, Xueqiu ;
Goudy, Laine ;
Zeng, Leiping ;
Chemparathy, Augustine ;
Chmura, Stephen ;
Heaton, Nicholas S. ;
Debs, Robert ;
Pande, Tara ;
Endy, Drew ;
La Russa, Marie F. ;
Lewis, David B. ;
Qi, Lei S. .
CELL, 2020, 181 (04) :865-+
[2]   Effect of 2 Inactivated SARS-CoV-2 Vaccines on Symptomatic COVID-19 Infection in Adults A Randomized Clinical Trial [J].
Al Kaabi, Nawal ;
Zhang, Yuntao ;
Xia, Shengli ;
Yang, Yunkai ;
Al Qahtani, Manaf M. ;
Abdulrazzaq, Najiba ;
Al Nusair, Majed ;
Hassany, Mohamed ;
Jawad, Jaleela S. ;
Abdalla, Jehad ;
Hussein, Salah Eldin ;
Al Mazrouei, Shamma K. ;
Al Karam, Maysoon ;
Li, Xinguo ;
Yang, Xuqin ;
Wang, Wei ;
Lai, Bonan ;
Chen, Wei ;
Huang, Shihe ;
Wang, Qian ;
Yang, Tian ;
Liu, Yang ;
Ma, Rui ;
Hussain, Zaidoon M. ;
Khan, Tehmina ;
Saifuddin Fasihuddin, Mohammed ;
You, Wangyang ;
Xie, Zhiqiang ;
Zhao, Yuxiu ;
Jiang, Zhiwei ;
Zhao, Guoqing ;
Zhang, Yanbo ;
Mahmoud, Sally ;
ElTantawy, Islam ;
Xiao, Peng ;
Koshy, Ashish ;
Zaher, Walid Abbas ;
Wang, Hui ;
Duan, Kai ;
Pan, An ;
Yang, Xiaoming .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2021, 326 (01) :35-45
[3]   Vaccinomic approach for novel multi epitopes vaccine against severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) [J].
Almofti, Yassir A. ;
Abd-elrahman, Khoubieb Ali ;
Eltilib, Elsideeq E. M. .
BMC IMMUNOLOGY, 2021, 22 (01)
[4]   Immunogenicity of Ad26.COV2.S vaccine against SARS-CoV-2 variants in humans [J].
Alter, Galit ;
Yu, Jingyou ;
Liu, Jinyan ;
Chandrashekar, Abishek ;
Borducchi, Erica N. ;
Tostanoski, Lisa H. ;
McMahan, Katherine ;
Jacob-Dolan, Catherine ;
Martinez, David R. ;
Chang, Aiquan ;
Anioke, Tochi ;
Lifton, Michelle ;
Nkolola, Joseph ;
Stephenson, Kathryn E. ;
Atyeo, Caroline ;
Shin, Sally ;
Fields, Paul ;
Kaplan, Ian ;
Robins, Harlan ;
Amanat, Fatima ;
Krammer, Florian ;
Baric, Ralph S. ;
Le Gars, Mathieu ;
Sadoff, Jerald ;
de Groot, Anne Marit ;
Heerwegh, Dirk ;
Struyf, Frank ;
Douoguih, Macaya ;
van Hoof, Johan ;
Schuitemaker, Hanneke ;
Barouch, Dan H. .
NATURE, 2021, 596 (7871) :268-+
[5]   The proximal origin of SARS-CoV-2 [J].
Andersen, Kristian G. ;
Rambaut, Andrew ;
Lipkin, W. Ian ;
Holmes, Edward C. ;
Garry, Robert F. .
NATURE MEDICINE, 2020, 26 (04) :450-452
[6]   INO-4800 DNA vaccine induces neutralizing antibodies and T cell activity against global SARS-CoV-2 variants [J].
Andrade, Viviane M. ;
Christensen-Quick, Aaron ;
Agnes, Joseph ;
Tur, Jared ;
Reed, Charles ;
Kalia, Richa ;
Marrero, Idania ;
Elwood, Dustin ;
Schultheis, Katherine ;
Purwar, Mansi ;
Reuschel, Emma ;
McMullan, Trevor ;
Pezzoli, Patrick ;
Kraynyak, Kim ;
Sylvester, Albert ;
Mammen, Mammen P. ;
Tebas, Pablo ;
Joseph Kim, J. ;
Weiner, David B. ;
Smith, Trevor R. F. ;
Ramos, Stephanie J. ;
Humeau, Laurent M. ;
Boyer, Jean D. ;
Broderick, Kate E. .
NPJ VACCINES, 2021, 6 (01)
[7]   Could mutations of SARS-CoV-2 suppress diagnostic detection? [J].
Ascoli, Carl A. .
NATURE BIOTECHNOLOGY, 2021, 39 (03) :274-+
[8]   Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine [J].
Baden, Lindsey R. ;
El Sahly, Hana M. ;
Essink, Brandon ;
Kotloff, Karen ;
Frey, Sharon ;
Novak, Rick ;
Diemert, David ;
Spector, Stephen A. ;
Rouphael, Nadine ;
Creech, C. Buddy ;
McGettigan, John ;
Khetan, Shishir ;
Segall, Nathan ;
Solis, Joel ;
Brosz, Adam ;
Fierro, Carlos ;
Schwartz, Howard ;
Neuzil, Kathleen ;
Corey, Larry ;
Gilbert, Peter ;
Janes, Holly ;
Follmann, Dean ;
Marovich, Mary ;
Mascola, John ;
Polakowski, Laura ;
Ledgerwood, Julie ;
Graham, Barney S. ;
Bennett, Hamilton ;
Pajon, Rolando ;
Knightly, Conor ;
Leav, Brett ;
Deng, Weiping ;
Zhou, Honghong ;
Han, Shu ;
Ivarsson, Melanie ;
Miller, Jacqueline ;
Zaks, Tal .
NEW ENGLAND JOURNAL OF MEDICINE, 2021, 384 (05) :403-416
[9]   Genome-wide CRISPR screening identifies TMEM106B as a proviral host factor for SARS-CoV-2 [J].
Baggen, Jim ;
Persoons, Leentje ;
Vanstreels, Els ;
Jansen, Sander ;
Van Looveren, Dominique ;
Boeckx, Bram ;
Geudens, Vincent ;
De Man, Julie ;
Jochmans, Dirk ;
Wauters, Joost ;
Wauters, Els ;
Vanaudenaerde, Bart M. ;
Lambrechts, Diether ;
Neyts, Johan ;
Dallmeier, Kai ;
Thibaut, Hendrik Jan ;
Jacquemyn, Maarten ;
Maes, Piet ;
Daelemans, Dirk .
NATURE GENETICS, 2021, 53 (04) :435-+
[10]   The use of genomics in microbial vaccine development [J].
Bambini, Stefania ;
Rappuoli, Rino .
DRUG DISCOVERY TODAY, 2009, 14 (5-6) :252-260