PROSTATE SEGMENTATION USING Z-NET

被引:0
作者
Zhang, Yue [1 ,2 ]
Wu, Jiong [3 ]
Chen, Wanli [1 ]
Chen, Yifan [1 ,4 ]
Tang, Xiaoying [1 ]
机构
[1] Southern Univ Sci & Technol, Dept Elect & Elect Engn, Shenzhen, Peoples R China
[2] Univ Hong Kong, Dept Elect & Elect Engn, Hong Kong, Peoples R China
[3] Sun Yat Sen Univ, Sch Elect & Informat Technol, Guangzhou, Guangdong, Peoples R China
[4] Univ Waikato, Fac Sci & Engn, Hamilton, New Zealand
来源
2019 IEEE 16TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI 2019) | 2019年
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
Prostate segmentation; PROMISE; 12; Challenge; convolutional neural networks; MRI; Z-net;
D O I
10.1109/isbi.2019.8759554
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
In this paper, we proposed a novel architecture of convolutional neural network (CNN), namely Z-net, for segmenting prostate from magnetic resonance images (MRIs). In the proposed Z-net, 5 pairs of Z-block and decoder Z-block with different sizes and numbers of feature maps were assembled in a way similar to that of U-net. The proposed architecture can capture more multi-level features by using concatenation and dense connection. A total of 45 training images were used to train the proposed Z-net and the evaluations were conducted qualitatively on 5 validation images and quantitatively on 30 testing images In addition, three approaches including pad and cut, 2D resize, and 3D resize for uniforming the size of samples were evaluated and compared. The experimental results demonstrated that the 2D resize is the most suitable approach for the proposed Z-net. Compared to the other two classical CNN architectures, the proposed method was observed with superior performance for segmenting prostate.
引用
收藏
页码:11 / 14
页数:4
相关论文
共 13 条
  • [1] Active contours without edges
    Chan, TF
    Vese, LA
    [J]. IEEE TRANSACTIONS ON IMAGE PROCESSING, 2001, 10 (02) : 266 - 277
  • [2] MEASURES OF THE AMOUNT OF ECOLOGIC ASSOCIATION BETWEEN SPECIES
    DICE, LR
    [J]. ECOLOGY, 1945, 26 (03) : 297 - 302
  • [3] A survey of prostate segmentation methodologies in ultrasound, magnetic resonance and computed tomography images
    Ghose, Soumya
    Oliver, Arnau
    Marti, Robert
    Llado, Xavier
    Vilanova, Joan C.
    Freixenet, Jordi
    Mitra, Jhimli
    Sidibe, Desire
    Meriaudeau, Fabrice
    [J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2012, 108 (01) : 262 - 287
  • [4] Jia HZ, 2017, I S BIOMED IMAGING, P762, DOI 10.1109/ISBI.2017.7950630
  • [5] Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE)
    Langerak, Thomas Robin
    van der Heide, Uulke A.
    Kotte, Alexis N. T. J.
    Viergever, Max A.
    van Vulpen, Marco
    Pluim, Josien P. W.
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2010, 29 (12) : 2000 - 2008
  • [6] Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge
    Litjens, Geert
    Toth, Robert
    van de Ven, Wendy
    Hoeks, Caroline
    Kerkstra, Sjoerd
    van Ginneken, Bram
    Vincent, Graham
    Guillard, Gwenael
    Birbeck, Neil
    Zhang, Jindang
    Strand, Robin
    Malmberg, Filip
    Ou, Yangming
    Davatzikos, Christos
    Kirschner, Matthias
    Jung, Florian
    Yuan, Jing
    Qiu, Wu
    Gao, Qinquan
    Edwards, Philip Eddie
    Maan, Bianca
    van der Heijden, Ferdinand
    Ghose, Soumya
    Mitra, Jhimli
    Dowling, Jason
    Barratt, Dean
    Huisman, Henkjan
    Madabhushi, Anant
    [J]. MEDICAL IMAGE ANALYSIS, 2014, 18 (02) : 359 - 373
  • [7] Cancer treatment and survivorship statistics, 2016
    Miller, Kimberly D.
    Siegel, Rebecca L.
    Lin, Chun Chieh
    Mariotto, Angela B.
    Kramer, Joan L.
    Rowland, Julia H.
    Stein, Kevin D.
    Alteri, Rick
    Jemal, Ahmedin
    [J]. CA-A CANCER JOURNAL FOR CLINICIANS, 2016, 66 (04) : 271 - 289
  • [8] Mirzaev Inom, 2017, PROMISE12 CHALLENGE
  • [9] Pathology of benign prostatic hyperplasia
    Roehrborn, C. G.
    [J]. INTERNATIONAL JOURNAL OF IMPOTENCE RESEARCH, 2008, 20 (Suppl 3) : S11 - S18
  • [10] U-Net: Convolutional Networks for Biomedical Image Segmentation
    Ronneberger, Olaf
    Fischer, Philipp
    Brox, Thomas
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION, PT III, 2015, 9351 : 234 - 241