Computer simulations of membrane proteins

被引:196
|
作者
Ash, WL [1 ]
Zlomislic, MR [1 ]
Oloo, EO [1 ]
Tieleman, DP [1 ]
机构
[1] Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
来源
基金
加拿大健康研究院;
关键词
molecular dynamics simulation; ion channel; helix-helix interaction; antimicrobial peptide; bilayer structure; outer membrane protein; aquaporin;
D O I
10.1016/j.bbamem.2004.04.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computer simulations are rapidly becoming a standard tool to study the structure and dynamics of lipids and membrane proteins. Increasing computer capacity allows unbiased simulations of lipid and membrane-active peptides. With the increasing number of highresolution structures of membrane proteins, which also enables homology modelling of more structures, a wide range of membrane proteins can now be simulated over time spans that capture essential biological processes. Longer time scales are accessible by special computational methods. We review recent progress in simulations of membrane proteins. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:158 / 189
页数:32
相关论文
共 50 条
  • [1] Lessons from computer simulations of Ras proteins in solution and in membrane
    Prakash, Priyanka
    Gorfe, Alemayehu A.
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2013, 1830 (11): : 5211 - 5218
  • [2] Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations
    Faraldo-Gómez, JD
    Forrest, LR
    Baaden, M
    Bond, PJ
    Domene, C
    Patargias, G
    Cuthbertson, J
    Sansom, MSP
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2004, 57 (04) : 783 - 791
  • [3] COMPUTER-SIMULATIONS OF HYDRATED PROTEINS
    CLEMENTI, E
    JOURNAL OF MOLECULAR LIQUIDS, 1989, 41 : 233 - 239
  • [4] Computer Simulations of Intrinsically Disordered Proteins
    Chong, Song-Ho
    Chatterjee, Prathit
    Ham, Sihyun
    ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 68, 2017, 68 : 117 - 134
  • [5] Computer simulations of lipid membrane domains
    Bennett, W. F. Drew
    Tieleman, D. Peter
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2013, 1828 (08): : 1765 - 1776
  • [6] Molecular dynamics simulations of membrane proteins
    McCammon, J. Andrew
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 241
  • [7] Molecular dynamics simulations of membrane proteins
    Turgut Baştuğ
    Serdar Kuyucak
    Biophysical Reviews, 2012, 4 (3) : 271 - 282
  • [8] Membrane proteins: molecular dynamics simulations
    Lindahl, Erik
    Sansom, Mark S. P.
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2008, 18 (04) : 425 - 431
  • [9] Membrane models for molecular simulations of peripheral membrane proteins
    Moqadam, Mahmoud
    Tubiana, Thibault
    Moutoussamy, Emmanuel E.
    Reuter, Nathalie
    ADVANCES IN PHYSICS-X, 2021, 6 (01):
  • [10] Molecular simulations of membrane proteins: Protein/membrane interactions
    Sansom, Mark
    Bond, Peter J.
    Khalid, Syma
    Balali-Mood, Kia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231