The UCSC Genome Browser Database

被引：1223

作者：

Karolchik, D ^{[1
]}

Baertsch, R ^{[1
]}

Diekhans, M ^{[1
]}

Furey, TS ^{[1
]}

Hinrichs, A ^{[1
]}

Lu, YT ^{[1
]}

Roskin, KM ^{[1
]}

Schwartz, M ^{[1
]}

Sugnet, CW ^{[1
]}

Thomas, DJ ^{[1
]}

Weber, RJ ^{[1
]}

Haussler, D ^{[1
]}

Kent, WJ ^{[1
]}

机构：

[1] Univ Calif Santa Cruz, Sch Engn, Genome Bioinformat Grp, Santa Cruz, CA 95064 USA

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

关键词：

D O I：

10.1093/nar/gkg129

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. The database is optimized to support fast interactive performance with the web-based UCSC Genome Browser, a tool built on top of the database for rapid visualization and querying of the data at many levels. The annotations for a given genome are displayed in the browser as a series of tracks aligned with the genomic sequence. Sequence data and annotations may also be viewed in a text-based tabular format or downloaded as tab-delimited at files. The Genome Browser Database, browsing tools and downloadable data files can all be found on the UCSC Genome Bioinformatics website (http://genome.ucsc.edu), which also contains links to documentation and related technical information.

引用

页码：51 / 54

页数：4

共 12 条

[1] GenBank [J].

Benson, DA ;

Boguski, MS ;

Lipman, DJ ;

Ostell, J ;

Ouellette, BFF ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :12-17

[2] Prediction of complete gene structures in human genomic DNA [J].

Burge, C ;

Karlin, S .

JOURNAL OF MOLECULAR BIOLOGY, 1997, 268 (01) :78-94

[3] Integration of cytogenetic landmarks into the draft sequence of the human genome [J].

Cheung, VG ;

Nowak, N ;

Jang, W ;

Kirsch, IR ;

Zhao, S ;

Chen, XN ;

Furey, TS ;

Kim, UJ ;

Kuo, WL ;

Olivier, M ;

Conroy, J ;

Kasprzyk, A ;

Massa, H ;

Yonescu, R ;

Sait, S ;

Thoreen, C ;

Snijders, A ;

Lemyre, E ;

Bailey, JA ;

Bruzel, A ;

Burrill, WD ;

Clegg, SM ;

Collins, S ;

Dhami, P ;

Friedman, C ;

Han, CS ;

Herrick, S ;

Lee, J ;

Ligon, AH ;

Lowry, S ;

Morley, M ;

Narasimhan, S ;

Osoegawa, K ;

Peng, Z ;

Plajzer-Frick, I ;

Quade, BJ ;

Scott, D ;

Sirotkin, K ;

Thorpe, AA ;

Gray, JW ;

Hudson, J ;

Pinkel, D ;

Ried, T ;

Rowen, L ;

Shen-Ong, GL ;

Strausberg, RL ;

Birney, E ;

Callen, DF ;

Cheng, JF ;

Cox, DR .

NATURE, 2001, 409 (6822) :953-958

[4] The Distributed Annotation System [J].

Dowell, Robin D. ;

Jokerst, Rodney M. ;

Day, Allen ;

Eddy, Sean R. ;

Stein, Lincoln .

BMC BIOINFORMATICS, 2001, 2 (1)

[5] The Ensembl genome database project [J].

Hubbard, T ;

Barker, D ;

Birney, E ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Huminiecki, L ;

Kasprzyk, A ;

Lehvaslaiho, H ;

Lijnzaad, P ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Pocock, M ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Clamp, M .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :38-41

[6] The human genome browser at UCSC [J].

Kent, WJ ;

Sugnet, CW ;

Furey, TS ;

Roskin, KM ;

Pringle, TH ;

Zahler, AM ;

Haussler, D .

GENOME RESEARCH, 2002, 12 (06) :996-1006

[7]

Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]

[8]

KENT WJ, 2002, LINUX J, V99, P68

[9]

KULP D, 1996, ISMB, V4, P134

[10] Initial sequencing and analysis of the human genome [J].

Lander, ES ;

Int Human Genome Sequencing Consortium ;

Linton, LM ;

Birren, B ;

Nusbaum, C ;

Zody, MC ;

Baldwin, J ;

Devon, K ;

Dewar, K ;

Doyle, M ;

FitzHugh, W ;

Funke, R ;

Gage, D ;

Harris, K ;

Heaford, A ;

Howland, J ;

Kann, L ;

Lehoczky, J ;

LeVine, R ;

McEwan, P ;

McKernan, K ;

Meldrim, J ;

Mesirov, JP ;

Miranda, C ;

Morris, W ;

Naylor, J ;

Raymond, C ;

Rosetti, M ;

Santos, R ;

Sheridan, A ;

Sougnez, C ;

Stange-Thomann, N ;

Stojanovic, N ;

Subramanian, A ;

Wyman, D ;

Rogers, J ;

Sulston, J ;

Ainscough, R ;

Beck, S ;

Bentley, D ;

Burton, J ;

Clee, C ;

Carter, N ;

Coulson, A ;

Deadman, R ;

Deloukas, P ;

Dunham, A ;

Dunham, I ;

Durbin, R ;

French, L .

NATURE, 2001, 409 (6822) :860-921

← 1 2 →