Genome-wide intraspecific DNA-sequence variations in rice

被引:97
作者
Han, B
Xue, YB
机构
[1] Chinese Acad Sci, Shanghai Inst Biol Sci, Natl Ctr Gene Res, Shanghai 200233, Peoples R China
[2] Chinese Acad Sci, Inst Genet & Dev Biol, Beijing 100101, Peoples R China
关键词
D O I
10.1016/S1369-5266(03)00004-9
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Genome-wide comparative analysis of the DNA sequences of two major cultivated rice subspecies, Oryza sativa L. ssp indica and Oryza sativa L. ssp japonica, have revealed their extensive microcolinearity in gene order and content. However, deviations from colinearity are frequent owing to insertions or deletions. Intraspecific sequence polymorphisms commonly occur in both coding and non-coding regions. These variations often affect gene structures and may contribute to intraspecific phenotypic adaptations.
引用
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页码:134 / 138
页数:5
相关论文
共 23 条
[1]  
Bancroft I, 2002, GENOME BIOL, V3
[2]   The use of the Monsanto draft rice genome sequence in research [J].
Barry, GF .
PLANT PHYSIOLOGY, 2001, 125 (03) :1164-1165
[3]   Comparative sequence analysis of plant nuclear genomes: Microcolinearity and its many exceptions [J].
Bennetzen, JL .
PLANT CELL, 2000, 12 (07) :1021-1029
[4]   An integrated physical and genetic map of the rice genome [J].
Chen, MS ;
Presting, G ;
Barbazuk, WB ;
Goicoechea, JL ;
Blackmon, B ;
Fang, FC ;
Kim, H ;
Frisch, D ;
Yu, YS ;
Sun, SH ;
Higingbottom, S ;
Phimphilai, J ;
Phimphilai, D ;
Thurmond, S ;
Gaudette, B ;
Li, P ;
Liu, JD ;
Hatfield, J ;
Main, D ;
Farrar, K ;
Henderson, C ;
Barnett, L ;
Costa, R ;
Williams, B ;
Walser, S ;
Atkins, M ;
Hall, C ;
Budiman, MA ;
Tomkins, JP ;
Luo, MZ ;
Bancroft, I ;
Salse, J ;
Regad, F ;
Mohapatra, T ;
Singh, NK ;
Tyagi, AK ;
Soderlund, C ;
Dean, RA ;
Wing, RA .
PLANT CELL, 2002, 14 (03) :537-545
[5]   Genome relationships: The grass model in current research [J].
Devos, KM ;
Gale, MD .
PLANT CELL, 2000, 12 (05) :637-646
[6]   Sequence and analysis of rice chromosome 4 [J].
Feng, Q ;
Zhang, YJ ;
Hao, P ;
Wang, SY ;
Fu, G ;
Huang, YC ;
Li, Y ;
Zhu, JJ ;
Liu, YL ;
Hu, X ;
Jia, PX ;
Zhang, Y ;
Zhao, Q ;
Ying, K ;
Yu, SL ;
Tang, YS ;
Weng, QJ ;
Zhang, L ;
Lu, Y ;
Mu, J ;
Lu, YQ ;
Zhang, LS ;
Yu, Z ;
Fan, DL ;
Liu, XH ;
Lu, TT ;
Li, C ;
Wu, YR ;
Sun, TG ;
Lei, HY ;
Li, T ;
Hu, H ;
Guan, JP ;
Wu, M ;
Zhang, RQ ;
Zhou, B ;
Chen, ZH ;
Chen, L ;
Jin, ZQ ;
Wang, R ;
Yin, HF ;
Cai, Z ;
Ren, SX ;
Lv, G ;
Gu, WY ;
Zhu, GF ;
Tu, YF ;
Jia, J ;
Zhang, Y ;
Chen, J .
NATURE, 2002, 420 (6913) :316-320
[7]   Intraspecific violation of genetic colinearity and its implications in maize [J].
Fu, HH ;
Dooner, HK .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (14) :9573-9578
[8]   Rice as a model for cereal genomics [J].
Goff, SA .
CURRENT OPINION IN PLANT BIOLOGY, 1999, 2 (02) :86-89
[9]   A draft sequence of the rice genome (Oryza sativa L. ssp japonica) [J].
Goff, SA ;
Ricke, D ;
Lan, TH ;
Presting, G ;
Wang, RL ;
Dunn, M ;
Glazebrook, J ;
Sessions, A ;
Oeller, P ;
Varma, H ;
Hadley, D ;
Hutchinson, D ;
Martin, C ;
Katagiri, F ;
Lange, BM ;
Moughamer, T ;
Xia, Y ;
Budworth, P ;
Zhong, JP ;
Miguel, T ;
Paszkowski, U ;
Zhang, SP ;
Colbert, M ;
Sun, WL ;
Chen, LL ;
Cooper, B ;
Park, S ;
Wood, TC ;
Mao, L ;
Quail, P ;
Wing, R ;
Dean, R ;
Yu, YS ;
Zharkikh, A ;
Shen, R ;
Sahasrabudhe, S ;
Thomas, A ;
Cannings, R ;
Gutin, A ;
Pruss, D ;
Reid, J ;
Tavtigian, S ;
Mitchell, J ;
Eldredge, G ;
Scholl, T ;
Miller, RM ;
Bhatnagar, S ;
Adey, N ;
Rubano, T ;
Tusneem, N .
SCIENCE, 2002, 296 (5565) :92-100
[10]  
Harushima Y, 1998, GENETICS, V148, P479