A review on convolutional neural network based deep learning methods in gene expression data for disease diagnosis

被引:13
作者
Gunavathi, C. [1 ]
Sivasubramanian, K. [2 ]
Keerthika, P. [3 ]
Paramasivam, C. [4 ]
机构
[1] Vellore Inst Technol, Sch Informat Technol & Engn, Vellore 632014, Tamil Nadu, India
[2] KS Rangasamy Coll Technol, Dept Elect & Commun Engn, Tiruchengode 637215, Tamil Nadu, India
[3] Kongu Engn Coll, Dept Comp Sci & Engn, Erode 638060, Tamil Nadu, India
[4] Amrita Vishwa Vidyapeetham, Dept Elect & Commun Engn, Bengaluru 560035, Karnataka, India
关键词
Gene expression; Deep learning; Convolutional neural network; Classification; Microarray; RNA-Seq; CLASSIFICATION;
D O I
10.1016/j.matpr.2020.10.263
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
Bioinformatics is the discipline of employing informatics technologies on biological datasets to extract the hidden knowledge from both biology and computer science fields. Gene expression datasets are widely used in disease prediction and diagnosis especially in cancer treatment. There are many computational techniques that are available for gene expression analysis. Deep learning methods are a fragment of machine learning techniques which are based on artificial neural networks. Convolutional neural networks are the most important deep learning model that is designed for data that comes in the form of multidimensional arrays. This paper reviews the recent research works that utilize convolutional neural network deep learning methods on gene expression data analysis. (c) 2021 Elsevier Ltd. All rights reserved. Selection and peer-review under responsibility of the scientific committee of the International Conference on Advances in Materials Research-2019.
引用
收藏
页码:2282 / 2285
页数:4
相关论文
共 50 条
[21]   A Deep Convolutional Neural Network For Early Diagnosis of Alzheimer's Disease [J].
Liu, Maximus ;
Shalaginov, Mikhail Y. ;
Liao, Rory ;
Zeng, Tingying Helen .
2022 IEEE-EMBS CONFERENCE ON BIOMEDICAL ENGINEERING AND SCIENCES, IECBES, 2022, :58-61
[22]   DETECTION OF CEREBRAL MICROBLEEDING BASED ON DEEP CONVOLUTIONAL NEURAL NETWORK [J].
Lu, Siyuan ;
Lu, Zhihai ;
Hou, Xiaoxia ;
Cheng, Hong ;
Wang, Shuihua .
2017 14TH INTERNATIONAL COMPUTER CONFERENCE ON WAVELET ACTIVE MEDIA TECHNOLOGY AND INFORMATION PROCESSING (ICCWAMTIP), 2017, :93-96
[23]   Chronic disease diagnosis model based on convolutional neural network and ensemble learning method [J].
Zhou, Huan ;
Zhang, Pei-Ying ;
Zou, Xiao ;
Liu, Jia ;
Wang, Wen-Jie .
DIGITAL HEALTH, 2023, 9
[24]   Deep Learning-Based Prediction of Alzheimer's Disease Using Microarray Gene Expression Data [J].
Abdelwahab, Mahmoud M. ;
Al-Karawi, Khamis A. ;
Semary, Hatem E. ;
Gulyaeva, Natalia V. .
BIOMEDICINES, 2023, 11 (12)
[25]   A Convolutional Neural Network based Deep Learning Technique for Identifying Road Attributes [J].
Jan, Zohaib ;
Verma, Brijesh ;
Affum, Joseph ;
Atabak, Sam ;
Moir, Lachlan .
2018 INTERNATIONAL CONFERENCE ON IMAGE AND VISION COMPUTING NEW ZEALAND (IVCNZ), 2018,
[26]   Plant Taxonomy In Hainan Based On Deep Convolutional Neural Network And Transfer Learning [J].
Liu, Wei ;
Feng, Wenlong ;
Huang, Mengxing ;
Han, Guilai ;
Lin, Jialun .
2020 IEEE 19TH INTERNATIONAL CONFERENCE ON TRUST, SECURITY AND PRIVACY IN COMPUTING AND COMMUNICATIONS (TRUSTCOM 2020), 2020, :1462-1467
[27]   CONVOLUTIONAL DEEP LEARNING NEURAL NETWORK FOR STROKE IMAGE RECOGNITION: REVIEW [J].
Tursynova, A. T. ;
Omarov, B. S. ;
Postolache, O. A. ;
Sakypbekova, M. Zh .
JOURNAL OF MATHEMATICS MECHANICS AND COMPUTER SCIENCE, 2021, 112 (04) :109-115
[28]   Diagnosis of gastric lesions through a deep convolutional neural network [J].
Zhang, Liming ;
Zhang, Yang ;
Wang, Li ;
Wang, Jiangyuan ;
Liu, Yulan .
DIGESTIVE ENDOSCOPY, 2021, 33 (05) :788-796
[29]   An Accurate Diagnosis and Classification of Breast Mammogram Using Transfer Learning in Deep Convolutional Neural Network [J].
Annamalai, Thiyagarajan ;
Chinnasamy, Murukesh ;
Pandian, AMary Joans Samuel Soundara .
TRAITEMENT DU SIGNAL, 2025, 42 (01) :343-352
[30]   Convolutional neural network models for cancer type prediction based on gene expression [J].
Mostavi, Milad ;
Chiu, Yu-Chiao ;
Huang, Yufei ;
Chen, Yidong .
BMC MEDICAL GENOMICS, 2020, 13 (Suppl 5)