The effect of acquisition resolution on orientation decoding from V1 BOLD fMRI at 7 T

被引:9
作者
Sengupta, Ayan [1 ]
Yakupov, Renat [2 ]
Speck, Oliver [2 ,3 ,4 ,5 ]
Pollmann, Stefan [1 ,3 ]
Hanke, Michael [3 ,6 ]
机构
[1] Otto Von Guericke Univ, Inst Psychol 2, Dept Expt Psychol, Universitatsplatz 2, D-39016 Magdeburg, Germany
[2] Otto Von Guericke Univ, Inst Expt Phys, Dept Biomed Magnet Resonance, D-39120 Magdeburg, Germany
[3] Ctr Behav Brain Sci, Universitatsplatz 2, D-39016 Magdeburg, Germany
[4] Leibniz Inst Neurobiol, Brenneckestr 6, D-39118 Magdeburg, Germany
[5] German Ctr Neurodegenerat Dis DZNE, Leipziger Str 44, D-39118 Magdeburg, Germany
[6] Otto Von Guericke Univ, Inst Psychol 2, Psychoinformat Lab, Universitatsplatz 2, D-39016 Magdeburg, Germany
基金
美国国家科学基金会;
关键词
Functional magnetic resonance imaging; Acquisition resolution; Decoding; OCULAR DOMINANCE COLUMNS; HUMAN VISUAL-CORTEX; SPATIAL-RESOLUTION; SELECTIVE ACTIVITY; PATTERN-ANALYSIS; ORGANIZATION; BRAIN; STEP; MAPS;
D O I
10.1016/j.neuroimage.2016.12.040
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
A decade after it was shown that the orientation of visual grating stimuli can be decoded from human visual cortex activity by means of multivariate pattern classification of BOLD fMRI data, numerous studies have investigated which aspects of neuronal activity are reflected in BOLD response patterns and are accessible for decoding. However, it remains inconclusive what the effect of acquisition resolution on BOLD fMRI decoding analyses is. The present study is the first to provide empirical ultra high-field fMRI data recorded at four spatial resolutions (0.8 mm, 1.4 mm, 2 mm, and 3 mm isotropic voxel size) on this topic in order to test hypotheses on the strength and spatial scale of orientation discriminating signals. We present detailed analysis, in line with predictions from previous simulation studies, about how the performance of orientation decoding varies with different acquisition resolutions. Moreover, we also examine different spatial filtering procedures and its effects on orientation decoding. Here we show that higher-resolution scans with subsequent down-sampling or lowpass filtering yield no benefit over scans natively recorded in the corresponding lower resolution regarding decoding accuracy. The orientation-related signal in the BOLD fMRI data is spatially broadband in nature, includes both high spatial frequency components, as well as large-scale biases previously proposed in the literature. Moreover, we found above chance-level contribution from large draining veins to orientation decoding. Acquired raw data were publicly released to facilitate further investigation.
引用
收藏
页码:64 / 76
页数:13
相关论文
共 55 条
  • [41] Generating stimuli for neuroscience using PsychoPy
    Peirce, Jonathan W.
    [J]. FRONTIERS IN NEUROINFORMATICS, 2009, 2
  • [42] Machine learning classifiers and fMRI: A tutorial overview
    Pereira, Francisco
    Mitchell, Tom
    Botvinick, Matthew
    [J]. NEUROIMAGE, 2009, 45 (01) : S199 - S209
  • [43] A studyforrest extension, retinotopic mapping and localization of higher visual areas
    Sengupta, Ayan
    Kaule, Falko R.
    Guntupalli, J. Swaroop
    Hoffmann, Michael B.
    Haeusler, Christian
    Stadler, Joerg
    Hanke, Michael
    [J]. SCIENTIFIC DATA, 2016, 3
  • [44] Spatio-temporal point-spread function of fMRI signal in human gray matter at 7 Tesla
    Shmuel, Amir
    Yacoub, Essa
    Chaimow, Denis
    Logothetis, Nikos K.
    Ugurbil, Kamil
    [J]. NEUROIMAGE, 2007, 35 (02) : 539 - 552
  • [45] Mechanisms underlying decoding at 7 T: Ocular dominance columns, broad structures, and macroscopic blood vessels in V1 convey information on the stimulated eye
    Shmuel, Amir
    Chaimow, Denis
    Raddatz, Guenter
    Ugurbil, Kamil
    Yacoub, Essa
    [J]. NEUROIMAGE, 2010, 49 (03) : 1957 - 1964
  • [46] Advances in functional and structural MR image analysis and implementation as FSL
    Smith, SM
    Jenkinson, M
    Woolrich, MW
    Beckmann, CF
    Behrens, TEJ
    Johansen-Berg, H
    Bannister, PR
    De Luca, M
    Drobnjak, I
    Flitney, DE
    Niazy, RK
    Saunders, J
    Vickers, J
    Zhang, YY
    De Stefano, N
    Brady, JM
    Matthews, PM
    [J]. NEUROIMAGE, 2004, 23 : S208 - S219
  • [47] Multiscale Pattern Analysis of Orientation-Selective Activity in the Primary Visual Cortex
    Swisher, Jascha D.
    Gatenby, J. Christopher
    Gore, John C.
    Wolfe, Benjamin A.
    Moon, Chan-Hong
    Kim, Seong-Gi
    Tong, Frank
    [J]. JOURNAL OF NEUROSCIENCE, 2010, 30 (01) : 325 - 330
  • [48] Relationship between BOLD amplitude and pattern classification of orientation-selective activity in the human visual cortex
    Tong, Frank
    Harrison, Stephenie A.
    Dewey, John A.
    Kamitani, Yukiyasu
    [J]. NEUROIMAGE, 2012, 63 (03) : 1212 - 1222
  • [49] Comparison of physiological noise at 1.5 T, 3 T and 7 T and optimization of fMRI acquisition parameters
    Triantafyllou, C
    Hoge, RD
    Krueger, G
    Wiggins, CJ
    Potthast, A
    Wiggins, GC
    Wald, LL
    [J]. NEUROIMAGE, 2005, 26 (01) : 243 - 250
  • [50] The road to functional imaging and ultrahigh fields
    Ugurbil, Kamil
    [J]. NEUROIMAGE, 2012, 62 (02) : 726 - 735