High-density linkage mapping and distribution of segregation distortion regions in the oak genome

被引：48
作者：
Bodenes, Catherine [1 ,2 ]
Chancerel, Emilie [1 ,2 ]
Ehrenmann, Francois [1 ,2 ]
Kremer, Antoine [1 ,2 ]
Plomion, Christophe [1 ,2 ]
机构：
[1] INRA, BIOGECO UMR1202, F-33610 Cestas, France
[2] Univ Bordeaux, BIOGECO UMR1202, F-33610 Talence, France
来源：
DNA RESEARCH | 2016年 / 23卷 / 02期
基金：
欧洲研究理事会;
关键词：
high-density linkage map; SNP; segregation distortion; reproductive barriers; Quercus; QUANTITATIVE TRAIT LOCI; QUERCUS-ROBUR L; GENETIC-MAP; INBREEDING DEPRESSION; EUCALYPTUS-GRANDIS; SNP DISCOVERY; CONSTRUCTION; PETRAEA; INTROGRESSION; EVOLUTION;
D O I：
10.1093/dnares/dsw001
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
We developed the densest single-nucleotide polymorphism (SNP)-based linkage genetic map to date for the genus Quercus. An 8k gene-based SNP array was used to genotype more than 1,000 full-sibs from two intraspecific and two interspecific full-sib families of Quercus petraea and Quercus robur. A high degree of collinearity was observed between the eight parental maps of the two species. A composite map was then established with 4,261 SNP markers spanning 742 cM over the 12 linkage groups (LGs) of the oak genome. Nine genomic regions from six LGs displayed highly significant distortions of segregation. Two main hypotheses concerning the mechanisms underlying segregation distortion are discussed: genetic load vs. reproductive barriers. Our findings suggest a predominance of pre-zygotic to post-zygotic barriers.
引用
收藏
页码：115 / 124
页数：10
相关论文
共 50 条
  • [41] A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora)
    Qiu, Changliang
    Han, Zhaofang
    Li, Wanbo
    Ye, Kun
    Xie, Yangjie
    Wang, Zhiyong
    [J]. SCIENTIFIC REPORTS, 2018, 8
  • [42] A High-Density Genetic Linkage Map and QTL Mapping for Sex in Black Tiger Shrimp (Penaeus monodon)
    Guo, Liang
    Xu, Yu-Hui
    Zhang, Nan
    Zhou, Fa-Lin
    Huang, Jian-Hua
    Liu, Bao-Suo
    Jiang, Shi-Gui
    Zhang, Dian-Chang
    [J]. FRONTIERS IN GENETICS, 2019, 10
  • [43] High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
    Emilie Chancerel
    Jean-Baptiste Lamy
    Isabelle Lesur
    Céline Noirot
    Christophe Klopp
    François Ehrenmann
    Christophe Boury
    Grégoire Le Provost
    Philippe Label
    Céline Lalanne
    Valérie Léger
    Franck Salin
    Jean-Marc Gion
    Christophe Plomion
    [J]. BMC Biology, 11
  • [44] A high-density transcript linkage map of barley derived from a single population
    Sato, K.
    Nankaku, N.
    Takeda, K.
    [J]. HEREDITY, 2009, 103 (02) : 110 - 117
  • [45] Fine-Scale Mapping of the Nasonia Genome to Chromosomes Using a High-Density Genotyping Microarray
    Desjardins, Christopher A.
    Gadau, Juergen
    Lopez, Jacqueline A.
    Niehuis, Oliver
    Avery, Amanda R.
    Loehlin, David W.
    Richards, Stephen
    Colbourne, John K.
    Werren, John H.
    [J]. G3-GENES GENOMES GENETICS, 2013, 3 (02): : 205 - 215
  • [46] High-density linkage maps constructed in sweet cherry (Prunus avium L.) using cross- and self-pollination populations reveal chromosomal homozygosity in inbred families and non-syntenic regions with the peach genome
    Calle, Alejandro
    Cai, Lichun
    Iezzoni, Amy
    Wunsch, Ana
    [J]. TREE GENETICS & GENOMES, 2018, 14 (03)
  • [47] Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data
    Liu, Dongyuan
    Ma, Chouxian
    Hong, Weiguo
    Huang, Long
    Liu, Min
    Liu, Hui
    Zeng, Huaping
    Deng, Dejing
    Xin, Huaigen
    Song, Jun
    Xu, Chunhua
    Sun, Xiaowen
    Hou, Xilin
    Wang, Xiaowu
    Zheng, Hongkun
    [J]. PLOS ONE, 2014, 9 (06):
  • [48] An informative linkage map of soybean reveals QTLs for flowering time, leaflet morphology and regions of segregation distortion
    Yamanaka, N
    Ninomiya, S
    Hoshi, M
    Tsubokura, Y
    Yano, M
    Nagamura, Y
    Sasaki, T
    Harada, K
    [J]. DNA RESEARCH, 2001, 8 (02) : 61 - 72
  • [49] A high-density genetic map and growth related QTL mapping in bighead carp (Hypophthalmichthys nobilis)
    Fu, Beide
    Liu, Haiyang
    Yu, Xiaomu
    Tong, Jingou
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [50] First High-Density Linkage Map and QTL Fine Mapping for Growth-Related Traits of Spotted Sea bass (Lateolabrax maculatus)
    Liu, Yang
    Wang, Haolong
    Wen, Haishen
    Shi, Yue
    Zhang, Meizhao
    Qi, Xin
    Zhang, Kaiqiang
    Gong, Qingli
    Li, Jifang
    He, Feng
    Hu, Yanbo
    Li, Yun
    [J]. MARINE BIOTECHNOLOGY, 2020, 22 (04) : 526 - 538
12345