Residual dipolar couplings and some specific models for motional averaging

被引:12
作者
Deschamps, M [1 ]
Campbell, ID [1 ]
Boyd, J [1 ]
机构
[1] Univ Oxford, Dept Biochem, Oxford OX1 3QU, England
基金
英国惠康基金; 英国生物技术与生命科学研究理事会;
关键词
NMR; residual dipolar coupling; motional averaging;
D O I
10.1016/j.jmr.2004.09.023
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The measurement of residual dipolar couplings (RDCs) from partially oriented molecules is now widely used to provide restraints for NMR structure determination. Bond vibrations, random angular fluctuations around bond vectors and conformational exchange all influence the magnitude of the experimental RDCs. The effect that angular fluctuations have upon the magnitude of RDCs is quantitatively compared using three new models (elliptic, uni-dimensional, and equally populated two site jump) and three established models (static, isotropic motion in a cone and free diffusion about a fixed symmetry axis: Woessner's model) for motional averaging in the limit that the amplitude of motion beta(max) less than or equal to 15-20degrees. The influence of the different motional models on the value of R-obs determined from the distribution of RDCs is explored. The consequences of the different types of angular motion for the accurate determination of bond vector orientation, with respect to the alignment tensor, A, is investigated. The extent to which motion influences the magnitude of RDCs is compared to some non-dynamic factors affecting RDC size. (C) 2004 Elsevier Inc. All rights reserved.
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页码:118 / 132
页数:15
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