Untargeted Plasma Metabolomics Reveals Extensive Metabolic Alterations Among Treatment-Naive Human Immunodeficiency Virus/Hepatitis C Virus Co-Infected Patients with Liver Disease Progression
Both human immunodeficiency virus (HIV) and hepatitis C virus (HCV) may induce metabolic disorders and cause liver complications. Therefore, we aim to analyze the metabolite differences among treatment-naive HIV/HCV co-infected patients with versus without liver disease progression (LDP) and HIV mono-infected patients. A cross-sectional study was conducted in 65 HIV/HCV co-infected patients (22 with LDP and 43 without) and 65 HIV mono-infected patients in Dehong prefecture of Yunnan province, China. Plasma metabolomics were measured by gas chromatography-mass spectrometry (MS) and liquid chromatography-MS. Discrimination analysis, pathway enrichment analysis, generalized linear model with binomial distribution, and area under the receiver-operating characteristic curve (AUC) were conducted to identify bilateral differences in metabolites and pathways in different comparison groups. A total of 10,831 with 673 named and 10,158 unnamed metabolites were detected. Compared with HIV/HCV co-infected patients without LDP, phenylalanine, tyrosine, and tryptophan biosynthesis pathway with the increased level of tyrosine were significantly altered among HIV/HCV co-infected patients with LDP. Compared with HIV mono-infected patients, the decreased level of glutamine and increased levels of glutamic acid, arachidonic acid, and its derivatives were identified among HIV/HCV co-infected patients. Metabolite panels adjusted for baseline information had a higher accuracy than baseline model (without metabolite information) in distinguishing HIV/HCV co-infected patients with versus without LDP (AUC 0.951 vs. 0.849, p = .027) and HIV/HCV co-infected patients from HIV mono-infected patients (AUC 0.889 vs. 0.766, p < .001). A novel set of metabolites were found to discriminate HIV/HCV co-infected patients with versus without LDP, and from HIV mono-infected patients, which may have mechanistic and interventional implications.
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Altman, Brian J.
Stine, Zachary E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Stine, Zachary E.
Dang, Chi V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Babu, Hemalatha
Sperk, Maike
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Sperk, Maike
Ambikan, Anoop T.
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Ambikan, Anoop T.
Rachel, Gladys
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Rachel, Gladys
Viswanathan, Vinod Kumar
论文数: 0引用数: 0
h-index: 0
机构:
Govt Hosp Thorac Med, Tambaram Sanat, Chennai 600047, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Viswanathan, Vinod Kumar
Tripathy, Srikanth P.
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Tripathy, Srikanth P.
Nowak, Piotr
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med, S-14152 Stockholm, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Nowak, Piotr
Hanna, Luke Elizabeth
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Hanna, Luke Elizabeth
Neogi, Ujjwal
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
机构:
Cornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
King Abdullah Int Med Res Ctr, Riyadh, Saudi ArabiaCornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Cluntun, Ahmad A.
Lukey, Michael J.
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Dept Mol Med, Ithaca, NY 14853 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Lukey, Michael J.
Cerione, Richard A.
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Dept Mol Med, Ithaca, NY 14853 USA
Cornell Univ, Dept Chem & Chem Biol, Ithaca, NY 14853 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Cerione, Richard A.
Locasale, Jason W.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Duke Canc Inst, Duke Mol Physiol Inst, Dept Pharmacol & Canc Biol,Sch Med, Durham, NC 27708 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Locasale, Jason W.
[J].
TRENDS IN CANCER,
2017,
3
(03):
: 169
-
180
[8]
Cotte Alexia Karen, 2019, Oncotarget, V10, P2161, DOI 10.18632/oncotarget.26738
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Diamond, Deborah L.
Syder, Andrew J.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Virol & Infect Dis, Ctr Study Hepatitis C, New York, NY 10021 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Syder, Andrew J.
Jacobs, Jon M.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Jacobs, Jon M.
Sorensen, Christina M.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Sorensen, Christina M.
Walters, Kathie-Anne
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Walters, Kathie-Anne
Proll, Sean C.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Proll, Sean C.
McDermott, Jason E.
论文数: 0引用数: 0
h-index: 0
机构:Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
McDermott, Jason E.
Gritsenko, Marina A.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Gritsenko, Marina A.
Zhang, Qibin
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Zhang, Qibin
Zhao, Rui
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Zhao, Rui
Metz, Thomas O.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Metz, Thomas O.
Camp, David G., II
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Camp, David G., II
Waters, Katrina M.
论文数: 0引用数: 0
h-index: 0
机构:Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Waters, Katrina M.
Smith, Richard D.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Smith, Richard D.
Rice, Charles M.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Virol & Infect Dis, Ctr Study Hepatitis C, New York, NY 10021 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Rice, Charles M.
Katze, Michael G.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Univ Washington, Washington Natl Primate Res Ctr, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Altman, Brian J.
Stine, Zachary E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Stine, Zachary E.
Dang, Chi V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Abramson Canc Ctr, Perelman Sch Med, Philadelphia, PA 19104 USA
Univ Penn, Dept Med, Perelman Sch Med, Div Hematol Oncol, Philadelphia, PA 19104 USAUniv Penn, Abramson Family Canc Res Inst, Perelman Sch Med, Philadelphia, PA 19104 USA
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Babu, Hemalatha
Sperk, Maike
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Sperk, Maike
Ambikan, Anoop T.
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Ambikan, Anoop T.
Rachel, Gladys
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Rachel, Gladys
Viswanathan, Vinod Kumar
论文数: 0引用数: 0
h-index: 0
机构:
Govt Hosp Thorac Med, Tambaram Sanat, Chennai 600047, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Viswanathan, Vinod Kumar
Tripathy, Srikanth P.
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Tripathy, Srikanth P.
Nowak, Piotr
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med, S-14152 Stockholm, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Nowak, Piotr
Hanna, Luke Elizabeth
论文数: 0引用数: 0
h-index: 0
机构:
ICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, IndiaICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
Hanna, Luke Elizabeth
Neogi, Ujjwal
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Lab Med, Div Clin Microbiol, S-14152 Huddinge, SwedenICMR, Dept HIV AIDS, Natl Inst Res TB, Chennai 600031, Tamil Nadu, India
机构:
Cornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
King Abdullah Int Med Res Ctr, Riyadh, Saudi ArabiaCornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Cluntun, Ahmad A.
Lukey, Michael J.
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Dept Mol Med, Ithaca, NY 14853 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Lukey, Michael J.
Cerione, Richard A.
论文数: 0引用数: 0
h-index: 0
机构:
Cornell Univ, Dept Mol Med, Ithaca, NY 14853 USA
Cornell Univ, Dept Chem & Chem Biol, Ithaca, NY 14853 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Cerione, Richard A.
Locasale, Jason W.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Duke Canc Inst, Duke Mol Physiol Inst, Dept Pharmacol & Canc Biol,Sch Med, Durham, NC 27708 USACornell Univ, Grad Field Biochem Mol & Cell Biol, Ithaca, NY USA
Locasale, Jason W.
[J].
TRENDS IN CANCER,
2017,
3
(03):
: 169
-
180
[8]
Cotte Alexia Karen, 2019, Oncotarget, V10, P2161, DOI 10.18632/oncotarget.26738
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Diamond, Deborah L.
Syder, Andrew J.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Virol & Infect Dis, Ctr Study Hepatitis C, New York, NY 10021 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Syder, Andrew J.
Jacobs, Jon M.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Jacobs, Jon M.
Sorensen, Christina M.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Sorensen, Christina M.
Walters, Kathie-Anne
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Walters, Kathie-Anne
Proll, Sean C.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Proll, Sean C.
McDermott, Jason E.
论文数: 0引用数: 0
h-index: 0
机构:Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
McDermott, Jason E.
Gritsenko, Marina A.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Gritsenko, Marina A.
Zhang, Qibin
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Zhang, Qibin
Zhao, Rui
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Zhao, Rui
Metz, Thomas O.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Metz, Thomas O.
Camp, David G., II
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Camp, David G., II
Waters, Katrina M.
论文数: 0引用数: 0
h-index: 0
机构:Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Waters, Katrina M.
Smith, Richard D.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Smith, Richard D.
Rice, Charles M.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Virol & Infect Dis, Ctr Study Hepatitis C, New York, NY 10021 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Rice, Charles M.
Katze, Michael G.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA
Univ Washington, Washington Natl Primate Res Ctr, Seattle, WA 98195 USAUniv Washington, Sch Med, Dept Microbiol, Seattle, WA 98195 USA