An Expanded View of Complex Traits: From Polygenic to Omnigenic

被引:1797
作者
Boyle, Evan A. [1 ]
Li, Yang I. [1 ]
Pritchard, Jonathan K. [1 ,2 ,3 ]
机构
[1] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
[3] Stanford Univ, Howard Hughes Med Inst, Stanford, CA 94305 USA
基金
美国国家科学基金会;
关键词
GENOME-WIDE ASSOCIATION; GENETIC-VARIATION; HUMAN ADAPTATION; HUMAN-DISEASES; HERITABILITY; RARE; SCHIZOPHRENIA; ARCHITECTURE; MUTATIONS; VARIANTS;
D O I
10.1016/j.cell.2017.05.038
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A central goal of genetics is to understand the links between genetic variation and disease. Intuitively, one might expect disease-causing variants to cluster into key pathways that drive disease etiology. But for complex traits, association signals tend to be spread across most of the genome-including near many genes without an obvious connection to disease. We propose that gene regulatory networks are sufficiently interconnected such that all genes expressed in disease-relevant cells are liable to affect the functions of core disease-related genes and that most heritability can be explained by effects on genes outside core pathways. We refer to this hypothesis as an "omnigenic" model.
引用
收藏
页码:1177 / 1186
页数:10
相关论文
共 67 条
[1]  
Alasoo K., 2017, GENETIC EFFECTS CHRO
[2]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[3]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[4]  
Barton N.H., 2016, INFINITESIMAL MODEL
[5]  
BARTON NH, 1990, GENETICS, V124, P773
[6]   Impact of regulatory variation from RNA to protein [J].
Battle, Alexis ;
Khan, Zia ;
Wang, Sidney H. ;
Mitrano, Amy ;
Ford, Michael J. ;
Pritchard, Jonathan K. ;
Gilad, Yoav .
SCIENCE, 2015, 347 (6222) :664-667
[7]   Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease [J].
Botstein, D ;
Risch, N .
NATURE GENETICS, 2003, 33 (Suppl 3) :228-237
[8]   An atlas of genetic correlations across human diseases and traits [J].
Bulik-Sullivan, Brendan ;
Finucane, Hilary K. ;
Anttila, Verneri ;
Gusev, Alexander ;
Day, Felix R. ;
Loh, Po-Ru ;
Duncan, Laramie ;
Perry, John R. B. ;
Patterson, Nick ;
Robinson, Elise B. ;
Daly, Mark J. ;
Price, Alkes L. ;
Neale, Benjamin M. .
NATURE GENETICS, 2015, 47 (11) :1236-+
[9]   LD Score regression distinguishes confounding from polygenicity in genome-wide association studies [J].
Bulik-Sullivan, Brendan K. ;
Loh, Po-Ru ;
Finucane, Hilary K. ;
Ripke, Stephan ;
Yang, Jian ;
Patterson, Nick ;
Daly, Mark J. ;
Price, Alkes L. ;
Neale, Benjamin M. .
NATURE GENETICS, 2015, 47 (03) :291-+
[10]   Leveraging models of cell regulation and GWAS data in integrative network-based association studies [J].
Califano, Andrea ;
Butte, Atul J. ;
Friend, Stephen ;
Ideker, Trey ;
Schadt, Eric .
NATURE GENETICS, 2012, 44 (08) :841-847