ROC graphs for assessing the ability of a diagnostic marker to detect three disease classes with an umbrella ordering

被引:36
作者
Nakas, Christos T. [1 ]
Alonzo, Todd A.
机构
[1] Univ Aegean, Dept Stat & Actuarial Financial Math, Samos 83200, Greece
[2] Univ So Calif, Div Biostat, Calif Keck Sch Med, Arcadia, CA 91006 USA
关键词
diagnostic testing; lung cancer; nonparametric tests; ROC curve; ROC surface; umbrella ordering; U-statistics;
D O I
10.1111/j.1541-0420.2006.00715.x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Receiver operating characteristic (ROC) curves and the area under these curves are commonly used to assess the ability of a continuous diagnostic marker (e.g., DNA methylation markers) to correctly classify subjects as having a particular disease or not (e.g., cancer). These approaches, however, are not applicable to settings where the gold standard yields more than two disease states or classes. ROC surfaces and the volume under the surfaces have been proposed for settings with more than two disease classes. These approaches, however, do not allow one to assess the ability of a marker to differentiate two disease classes from a third disease class without requiring a monotone order for the three disease classes under study. That is, existing approaches do not accommodate an umbrella ordering of disease classes. This article proposes the construction of an ROC graph that is applicable for an umbrella ordering. Furthermore, this article proposes that a summary measure for this umbrella ROC graph can be used to summarize the classification accuracy, and corresponding variance estimates can be obtained using U-statistics theory or bootstrap methods. The proposed methods are illustrated using data from a study assessing the ability of a DNA methylation marker to correctly classify lung specimens into three histologic classes: squamous cell carcinoma, large cell carcinoma, and nontumor lung.
引用
收藏
页码:603 / 609
页数:7
相关论文
共 19 条
[1]   AREA ABOVE ORDINAL DOMINANCE GRAPH AND AREA BELOW RECEIVER OPERATING CHARACTERISTIC GRAPH [J].
BAMBER, D .
JOURNAL OF MATHEMATICAL PSYCHOLOGY, 1975, 12 (04) :387-415
[2]   Using the ROC curve for gauging treatment effect in clinical trials [J].
Brumback, LC ;
Pepe, MS ;
Alonzo, TA .
STATISTICS IN MEDICINE, 2006, 25 (04) :575-590
[3]   Comparing three-class diagnostic tests by three-way ROC analysis [J].
Dreiseitl, S ;
Ohno-Machado, L ;
Binder, M .
MEDICAL DECISION MAKING, 2000, 20 (03) :323-331
[4]   MethyLight: a high-throughput assay to measure DNA methylation [J].
Eads, Cindy A. ;
Danenberg, Kathleen D. ;
Kawakami, Kazuyuki ;
Saltz, Leonard B. ;
Blake, Corey ;
Shibata, Darryl ;
Danenberg, Peter V. ;
Laird, Peter W. .
NUCLEIC ACIDS RESEARCH, 2000, 28 (08) :32
[5]   Oncogenic mechanisms mediated by DNA methylation [J].
Laird, PW .
MOLECULAR MEDICINE TODAY, 1997, 3 (05) :223-229
[6]   Three-way ROCs [J].
Mossman, D .
MEDICAL DECISION MAKING, 1999, 19 (01) :78-89
[7]   Ordered multiple-class ROC analysis with continuous measurements [J].
Nakas, CT ;
Yiannoutsos, CT .
STATISTICS IN MEDICINE, 2004, 23 (22) :3437-3449
[8]   An ROC-type measure of diagnostic accuracy when the gold standard is continuous-scale [J].
Obuchowski, NA .
STATISTICS IN MEDICINE, 2006, 25 (03) :481-493
[9]   Estimating and comparing diagnostic tests' accuracy when the gold standard is not binary [J].
Obuchowski, NA .
ACADEMIC RADIOLOGY, 2005, 12 (09) :1198-1204
[10]   ROC curves in Clinical chemistry:: Uses, misuses, and possible solutions [J].
Obuchowski, NA ;
Lieber, ML ;
Wians, FH .
CLINICAL CHEMISTRY, 2004, 50 (07) :1118-1125